RNA id: TU65551


Basic Information

Item Value
RNA id TU65551
length 356
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G58963
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53813074 ~ 53813429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagttaaagcttggtcgcaagtgggtattccaaatggacaagcatacttccaacgttgtggcaaaatgacttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcaatcctatagaaaatttgtgggcagaactgaaaaagcttgtgcgagcaaggagacctacaaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcagtcaacttattgtgggaagcttgtggaaggccacccgaaacgtttggcccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65550 lncRNA upstream 705 53812083 ~ 53812369 (+) True G58962
TU65488 lncRNA upstream 47662 53765180 ~ 53765412 (+) True G58909
TU65486 lncRNA upstream 52204 53760659 ~ 53760870 (+) True G58907
TU65485 lncRNA upstream 52984 53759834 ~ 53760090 (+) True G58906
TU65425 lncRNA upstream 99319 53713337 ~ 53713755 (+) True G58852
TU65552 lncRNA downstream 1219 53814648 ~ 53854415 (+) True G58964
TU65567 lncRNA downstream 89714 53903143 ~ 53903594 (+) True LOC110525273
TU65611 lncRNA downstream 141416 53954845 ~ 53955147 (+) True G59016
TU65584 lncRNA downstream 153644 53967073 ~ 53969523 (+) False G58993
TU65585 lncRNA downstream 154413 53967842 ~ 53969548 (+) True G58993
XM_036980277.1 mRNA upstream 107653 53632831 ~ 53705421 (+) False LOC118936380
XR_005052132.1 mRNA upstream 126976 53685401 ~ 53686098 (+) True LOC118964886
XM_036980232.1 mRNA upstream 127686 53632831 ~ 53685388 (+) False LOC118936380
XM_036980268.1 mRNA upstream 129294 53632831 ~ 53683780 (+) False LOC118936380
XM_036980210.1 mRNA upstream 132722 53632831 ~ 53680352 (+) False LOC118936380
XM_036989706.1 mRNA downstream 73491 53886920 ~ 53903845 (+) False LOC110525273
XM_021605298.2 mRNA downstream 100499 53913928 ~ 53938476 (+) True LOC110525287
XM_036980382.1 mRNA downstream 142366 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA downstream 142402 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA downstream 142475 53955904 ~ 53966503 (+) True LOC110525297
TU65446 other upstream 141801 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2362139 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3729078 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 4919162 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5429817 48380542 ~ 48383257 (+) True G52324
TU65626 other downstream 174711 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 231420 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 907759 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 2092079 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 2206047 56019476 ~ 56030371 (+) True G61284

Expression Profile