RNA id: TU65584


Basic Information

Item Value
RNA id TU65584
length 2451
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G58993
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53967073 ~ 53969548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAACATGCTCACCGAAGCCAGGGTAGTCCCAACATCAGCAACCCTCAAGAGGCTCCGAAGCTGAGGAAGTGCGCATGCAAGAAGTTGCAGAAACAAGTTGTTGGGAAAACTTCATAACAAAGTGAGGGGAAGCCCAAAACATGGTGCGCAAATCTCAGTTTAATGAGATATGTCTCTTTCGAGGGTGGTAACCAAATGATTGAAAGCATTACACCCTTGCCTGAGCCTTCGTTCAATCCAAGTAGATGTGCAATGCGTGTACTGGACAACAACAGGAACGCCCTTATAGGCTCCAAGGTGCGACAAAAATAAATTGTCGACCTGGACCAAAGGATggggttaggtatagggttagCCTGAAAAACCCTGGGGCAGAATGCGGGTGTGAACAGTGGCTGGTAGAGCACTGTCCACACACTCACTTTAGGGATGCCAAAAGCAAAAGATGGAGGAATATTGCTTCTCAGCGGCTAGTAGCTGCTGTGAAAGAATCTTAAGCACAATAGACATGTCCCAGGTTGAGTAACCTCATCCCTAGGCTATTGCGCACGGTGCAATATAAGCCTTGGATATCAACGATTCAAAGTTGGCCTTAGTGGGAGTGACGATATAATTTTATGGGAGTGACCTACTGAGTAATGTATTTGTCATCATTAAATTTTGGAGAATCACATGACTGCAAAGAGTGGGGAGGGTTAAGGGGAAGGTGTTGTGGGTGACGATTGGTTGGTAGATTAAGCCAATGCCTATGCAatgggagtttctcccgttctttcTGTATTGGCTAACGAAGGCCAACAAGTTTGACGCGTTGGTCCACCAGACCTTCTCTCTGTCCAAAAAAGTCCTGCAAGGAGCATAAGACCATGGAACACAGTGTAGGACGAAACGATCTGTTTAGTCATACCACTTCTGTAAAACAGAGAGAATGCATAAGGAGGTTGGCCCTCTTTTTCAAGAGTTGAAGACCTGCATTTCTTTccttaaaatgtaaaaaataaatgtaaaaaataatctcACCAGCTATGCCCCGAGAGAGTAGAGAATTGCTTTGTTTGCTAGGGTATAAACCCTGCATAAACCCTGCCAGGACTGGTTGTGAGTAGGGTATAACTGCTGCCTGAAAGTCACTGGCCATCGAGGGGCTCGAAAATGAGGGGGAGGCCCTATTCCCTTGCTCTGTGTAGACGGAAAAGGGAGGGTAGGTAACATAGTTGAAAAAGCATACGGCATCCCTCTATTTCATTGGTTTGTCAGCTCTCCCGCCCCAAATGGCGTGGTCACCGTTTTTGGGATGGGGTCTCCCATGGCCCTCACACGGTCTTTGCTTCTATCAGGGTGCAGAAAGTCAGTCTGGATAGATGTGGGAAGTGGGCTCTCTCTAGACAGAGCAGGCAATGTATCTGAAGGAAGAAGTATTCAAAATCCTGTattcataaaaaaaaatcctgtatTCACTGAGAAGTAGAAAAGCAATTGACACAAAGCAAAAACCTTTCGTTCAGTACTCAACCTCTCAACAGGGTCTGAAGAGCTACGCTCAGCAAAAATATCCTACACGGTTCGCTTCAGCGCAAATAAGCAGGAAACAGGGTCATGCTGAGATCTAGAGAGCAATAGTCCTCAAGGGGAAGATGAACGAGAATGGCCATAGGCTTGGAGAGTGGCTCCTTATAAGAAGATGAGGGGCTCATCTCATTTTCCACTCTTGTCTCCAACATATGATTTCTATTGGCCCTTCCAAGAGTATTGGTGATCCTAGCGAATCCCCATATGTGATACATCAAAATGAGTATTTGAAGGAGAACCCTTATGTTATTGttccattgcaaaacattttgaaagGTTTCCTTCCTTGCTCTAATGAACATAACTCAGATACCCTGTTTCCTGATTCACACTGTAGGGTCGAACCAACATATTATTATAGCTTGgatattttcttttcacattgtGCTTTCTAGCATGGTTTCAGGAACTGTGATAGATGTATAACCAGGCCTCTCAGTACAGCTCGGCCAGGCTTGGCTTAGCCCTTTAGTGTGAATCAGGCATCTAGTTGCTAAACCAGCTGGTCGTGTGCCGATGATGATGTATGTTTCTACACATGGATGTTTTGCACACTCATCCAAACAGCACTTCAGGCCCAAGCCTTCACTTTTAGTGTTTTAATTTCTTTTTGcactttatatacagtacatatgtaATCTTATACAGTACAACCAATTAAATGTATGCTAGTGGAAGCTactggtaactgccaaaataaaggaaacgtgagtaatgagggatacaaagtatatcgaaagcaggtgcttccacacttatgtggttcctgagttaattaagcaattaaaacaTCACATCGTGCTAAGGGTAATGtataaaatgcccagttgcccattattttgaaataggggtttaaagggtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65611 lncRNA upstream 11926 53954845 ~ 53955147 (+) True G59016
TU65567 lncRNA upstream 63479 53903143 ~ 53903594 (+) True LOC110525273
TU65552 lncRNA upstream 112658 53814648 ~ 53854415 (+) True G58964
TU65551 lncRNA upstream 153644 53813074 ~ 53813429 (+) True G58963
TU65550 lncRNA upstream 154704 53812083 ~ 53812369 (+) True G58962
TU65582 lncRNA downstream 99 53969622 ~ 53971233 (+) False G58992
TU65583 lncRNA downstream 99 53969622 ~ 53971184 (+) True G58992
TU65616 lncRNA downstream 3865 53973388 ~ 53973959 (+) True G59021
TU65619 lncRNA downstream 6775 53976298 ~ 53976613 (+) True G59024
TU65627 lncRNA downstream 13113 53982636 ~ 53983252 (+) True G59032
XM_036980382.1 mRNA upstream 570 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA upstream 570 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA upstream 570 53955904 ~ 53966503 (+) True LOC110525297
XM_021605298.2 mRNA upstream 28597 53913928 ~ 53938476 (+) True LOC110525287
XM_036989706.1 mRNA upstream 63228 53886920 ~ 53903845 (+) False LOC110525273
XM_036989711.1 mRNA downstream 75290 54044813 ~ 54089850 (+) False LOC110525327
XR_005051448.1 mRNA downstream 273298 54242821 ~ 54249212 (+) True LOC118964411
XM_021605381.2 mRNA downstream 313416 54282939 ~ 54297286 (+) False LOC110525344
XR_002473740.2 mRNA downstream 313416 54282939 ~ 54297286 (+) True LOC110525344
XM_021605445.2 mRNA downstream 450899 54420422 ~ 54444532 (+) True LOC110525380
TU65446 other upstream 295800 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2516138 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3883077 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 5073161 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5583816 48380542 ~ 48383257 (+) True G52324
TU65626 other downstream 18617 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 75326 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 751665 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1935985 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 2049953 56019476 ~ 56030371 (+) True G61284

Expression Profile