RNA id: TU65583


Basic Information

Item Value
RNA id TU65583
length 1563
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G58992
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53969622 ~ 53971233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtatttgtatttattatggatccctattagctactcttcctggggtccagcaaaattaaggcagtttataccatttttaaaacattacaatacatttacagatttcacaacacactgtgtgccctcaggcccctactccaccactaccacatatctacagtactaaatccatgtgtatgtgtagtgcttatgttatcgtgtgtgtgtgtatgcgccaatgtttgtgttgcatcacagtccccgctgttccataaggtgtttttttaatatgttttttaaatcaaattttactgctggcatgagttacttgatgtggaaaggagttccatgtagtcatgactctatgtagtactgtgtgcctcccatagtctgttctggacttggggactgtgaagagacctcttgtggcatgtcttatggggtatgcatgggtatcCAAGCTGTGTgacagtagtttagacagacagctcggtgcattcaacatgtcaatacctctcataaataaaagtagtgatgaagtcaatctctcctccactttcagccacgAGAGacttgacatgcatattattaatattagctctctgtgtacatccaagggtcagccgtgctgctctgttctgagccaattgtacaTTTccaaagtccttttttgtggcacctgaccgtatgactgaacagtagtcaaggtgtgacaaaactagggcctgtaggacctgccttgatgatagtgttgttaagaaggcagagcagcaatttattatggacagacttctccccatcttagctactgttgtatcaatatgttttaaccatgacagtttacaatctagggttactccaagcagttcagtcatctcaacttgctcaagttccacatgatttattacaatatttagttgaggtttagggtttagtgagagTTTTGTTCCAAATAAAATGATTTTAGttgtagaaatatttagggctaacttattccttgccacccactctgaaactaactgcagctctttgttgagtgttgagtcatctgcatacataggcactctggctttactcaaagtcaaaAACATGTAAAAAAGCAAGGgtcctaaacagctaccctggggaattcctgattctaactggattatatttgagaggcttccattaaagaacacccgcTGTGTTCTGTTAGAGAAGTAACTCGTTCTCCTCTCAGATATAGataccttattccttatgatttatttttggACTGAAATCTAGAGGCTtgatgttggtgtttcctttatttggcagttacctgtgtaTAAAATGACATACGAAATAATCTTCAAGAGATCTATCAGTTTTTACATTGACACAAACATGGCCAAACTGTATACAGTAGgtctagcctgagtgccagtctgttttgtGCTCTATGGCATGACAATGAATGACAAGGAGTTGGCAGTACAGCATAaaaagactggcacccaggctagtaCAGGTCATGTGATGTTTTGCTTGCAGGTTGCCATGGCGTTGAATTTATACAGCTTTGTTGTTGATAATGTACAGGTCCATGCCCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65585 lncRNA upstream 74 53967842 ~ 53969548 (+) True G58993
TU65584 lncRNA upstream 99 53967073 ~ 53969523 (+) False G58993
TU65611 lncRNA upstream 14475 53954845 ~ 53955147 (+) True G59016
TU65567 lncRNA upstream 66028 53903143 ~ 53903594 (+) True LOC110525273
TU65552 lncRNA upstream 115207 53814648 ~ 53854415 (+) True G58964
TU65616 lncRNA downstream 2204 53973388 ~ 53973959 (+) True G59021
TU65619 lncRNA downstream 5114 53976298 ~ 53976613 (+) True G59024
TU65627 lncRNA downstream 11452 53982636 ~ 53983252 (+) True G59032
TU65625 lncRNA downstream 15346 53986530 ~ 53987396 (+) True G59030
TU65644 lncRNA downstream 47082 54018266 ~ 54018626 (+) True G59049
XM_036980382.1 mRNA upstream 3119 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA upstream 3119 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA upstream 3119 53955904 ~ 53966503 (+) True LOC110525297
XM_021605298.2 mRNA upstream 31146 53913928 ~ 53938476 (+) True LOC110525287
XM_036989706.1 mRNA upstream 65777 53886920 ~ 53903845 (+) False LOC110525273
XM_036989711.1 mRNA downstream 73629 54044813 ~ 54089850 (+) False LOC110525327
XR_005051448.1 mRNA downstream 271637 54242821 ~ 54249212 (+) True LOC118964411
XM_021605381.2 mRNA downstream 311755 54282939 ~ 54297286 (+) False LOC110525344
XR_002473740.2 mRNA downstream 311755 54282939 ~ 54297286 (+) True LOC110525344
XM_021605445.2 mRNA downstream 449238 54420422 ~ 54444532 (+) True LOC110525380
TU65446 other upstream 298349 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2518687 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3885626 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 5075710 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5586365 48380542 ~ 48383257 (+) True G52324
TU65626 other downstream 16956 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 73665 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 750004 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1934324 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 2048292 56019476 ~ 56030371 (+) True G61284

Expression Profile