RNA id: TU65627


Basic Information

Item Value
RNA id TU65627
length 617
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G59032
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53982636 ~ 53983252 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taagccaccctttgccttgatgacagctttgcatactcttagcattctctcaaccaacttcacctggaatgctttcccaacagtcttgaaggagttcccacatatgttgagcacttgttggctgattttccttcactctgtggtccaactcatcccaaaacgtctcagtttggttgaggtcgggtgattgtggaggccaggtcatctgatgcagcatttcatcactctccttcttggtcaaatagcacttacacagcctggaggtgtgttgggtcattgtcccctTGAAAATTAAATGATAGCCCCACtaaacacaaaccagatgggatggtgtatcgctgcagaatgctgtggtagccacgctggttaagtgtgccttgaattctaagtaaatcacctgcagtatcaccagcaaagcacccccacatcatcacacctcctcctgcttcactgtgggaatgaCACATGCAGAGGTAATCCGTTCACcgactcatcagaccaaggacagatttccatcggtctaatgtccattgctcatgtttcttgcaagtctcttcttcttattggtgtcttttagaaataaaaaaaataaatcagcAATGTGACcgtgaaggctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65619 lncRNA upstream 6023 53976298 ~ 53976613 (+) True G59024
TU65616 lncRNA upstream 8677 53973388 ~ 53973959 (+) True G59021
TU65582 lncRNA upstream 11403 53969622 ~ 53971233 (+) False G58992
TU65583 lncRNA upstream 11452 53969622 ~ 53971184 (+) True G58992
TU65585 lncRNA upstream 13088 53967842 ~ 53969548 (+) True G58993
TU65625 lncRNA downstream 3278 53986530 ~ 53987396 (+) True G59030
TU65644 lncRNA downstream 35014 54018266 ~ 54018626 (+) True G59049
TU65645 lncRNA downstream 36558 54019810 ~ 54020016 (+) True G59050
TU65650 lncRNA downstream 41056 54024308 ~ 54024832 (+) True G59055
TU65653 lncRNA downstream 47702 54030954 ~ 54031158 (+) True G59058
XM_036980382.1 mRNA upstream 16133 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA upstream 16133 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA upstream 16133 53955904 ~ 53966503 (+) True LOC110525297
XM_021605298.2 mRNA upstream 44160 53913928 ~ 53938476 (+) True LOC110525287
XM_036989706.1 mRNA upstream 78791 53886920 ~ 53903845 (+) False LOC110525273
XM_036989711.1 mRNA downstream 61561 54044813 ~ 54089850 (+) False LOC110525327
XR_005051448.1 mRNA downstream 259569 54242821 ~ 54249212 (+) True LOC118964411
XM_021605381.2 mRNA downstream 299687 54282939 ~ 54297286 (+) False LOC110525344
XR_002473740.2 mRNA downstream 299687 54282939 ~ 54297286 (+) True LOC110525344
XM_021605445.2 mRNA downstream 437170 54420422 ~ 54444532 (+) True LOC110525380
TU65446 other upstream 311363 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2531701 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3898640 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 5088724 48893497 ~ 48893912 (+) True G53181
TU58443 other upstream 5599379 48380542 ~ 48383257 (+) True G52324
TU65626 other downstream 4888 53988140 ~ 53988597 (+) True G59031
TU65668 other downstream 61597 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 737936 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1922256 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 2036224 56019476 ~ 56030371 (+) True G61284

Expression Profile