RNA id: TU65645


Basic Information

Item Value
RNA id TU65645
length 207
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G59050
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54019810 ~ 54020016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTATTTTGAATAATTGTGTAATTAATCAAACcattgaaatatatttttgacGATTTCCAACTAACAAGCTAATGTAAACTCACCatattccgtacaaatgtgcgcaactgcgactctttatagtgttttatttacattttagaggcaataaggtgataagttggacctTCTCACTACCACGCATTAgattcgcttccccacccgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65644 lncRNA upstream 1184 54018266 ~ 54018626 (+) True G59049
TU65625 lncRNA upstream 32414 53986530 ~ 53987396 (+) True G59030
TU65627 lncRNA upstream 36558 53982636 ~ 53983252 (+) True G59032
TU65619 lncRNA upstream 43197 53976298 ~ 53976613 (+) True G59024
TU65616 lncRNA upstream 45851 53973388 ~ 53973959 (+) True G59021
TU65650 lncRNA downstream 4292 54024308 ~ 54024832 (+) True G59055
TU65653 lncRNA downstream 10938 54030954 ~ 54031158 (+) True G59058
TU65658 lncRNA downstream 14510 54034526 ~ 54034784 (+) True G59063
TU65662 lncRNA downstream 19035 54039051 ~ 54039412 (+) True G59067
TU65663 lncRNA downstream 19738 54039754 ~ 54040443 (+) True G59068
XM_036980382.1 mRNA upstream 53307 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA upstream 53307 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA upstream 53307 53955904 ~ 53966503 (+) True LOC110525297
XM_021605298.2 mRNA upstream 81334 53913928 ~ 53938476 (+) True LOC110525287
XM_036989706.1 mRNA upstream 115965 53886920 ~ 53903845 (+) False LOC110525273
XM_036989711.1 mRNA downstream 24797 54044813 ~ 54089850 (+) False LOC110525327
XR_005051448.1 mRNA downstream 222805 54242821 ~ 54249212 (+) True LOC118964411
XM_021605381.2 mRNA downstream 262923 54282939 ~ 54297286 (+) False LOC110525344
XR_002473740.2 mRNA downstream 262923 54282939 ~ 54297286 (+) True LOC110525344
XM_021605445.2 mRNA downstream 400406 54420422 ~ 54444532 (+) True LOC110525380
TU65626 other upstream 31213 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 348537 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2568875 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3935814 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 5125898 48893497 ~ 48893912 (+) True G53181
TU65668 other downstream 24833 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 701172 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1885492 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 1999460 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 2226568 56246584 ~ 56247770 (+) True G61804

Expression Profile