RNA id: TU65663


Basic Information

Item Value
RNA id TU65663
length 690
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G59068
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54039754 ~ 54040443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTtttatacttaaatatatttacaaccaaatacttttagacttttactcaagtagtatttcactgggtgactttcacttgagtcattttctattacggtatatttacttttactgaagtaaaacaattgggtatttttttccccactgttCACACACTACAGACAGAAAGTATGGAGCGTAGCACAGTATTACAATGTTGTTTTTCATCACAAAGGGGGTGTCCTTGTAATATGCTCCGGTATTCGAAGTACATTTGTACTACTTGAAAGTTGAGACCGGCTGTATCATTCCTTCCACAGCTGTGGGGGTATTTTCACTTCTTGGTTCCTTGAGCTGATCTATAAGCTATATAGGCTATTCATCAGCGACTGTTCTAACAGTAAACCAAACAACAAGAATCCACCCAAGAAGGTgttttgtttagaagtaataactAAGGATTCCAAGCTATAGTGAAATGGTAGAACCTGCTGTAGCCAACTATTGTAGCCAGCCATTAGCTTTTTTCTCCATgaccaaatcaaataaaatagtatttttcacatgcgccgaatacaacaggtgaatttcacagtgaaatgcttacttacaagcccttaaccaacaatgcagttttaagaaaaatacctaaagaaaaataagaaataaaagtaacaaataattaaagagcagcagtagagaggttatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65662 lncRNA upstream 342 54039051 ~ 54039412 (+) True G59067
TU65658 lncRNA upstream 4970 54034526 ~ 54034784 (+) True G59063
TU65653 lncRNA upstream 8596 54030954 ~ 54031158 (+) True G59058
TU65650 lncRNA upstream 14922 54024308 ~ 54024832 (+) True G59055
TU65645 lncRNA upstream 19738 54019810 ~ 54020016 (+) True G59050
TU65664 lncRNA downstream 232 54040675 ~ 54040897 (+) True G59069
TU65666 lncRNA downstream 1822 54042265 ~ 54042494 (+) True G59071
TU65669 lncRNA downstream 21274 54061717 ~ 54062635 (+) True LOC110525327
TU65871 lncRNA downstream 80009 54120452 ~ 54120684 (+) True G59255
TU65872 lncRNA downstream 82509 54122952 ~ 54123238 (+) True G59256
XM_036980382.1 mRNA upstream 73251 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA upstream 73251 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA upstream 73251 53955904 ~ 53966503 (+) True LOC110525297
XM_021605298.2 mRNA upstream 101278 53913928 ~ 53938476 (+) True LOC110525287
XM_036989706.1 mRNA upstream 135909 53886920 ~ 53903845 (+) False LOC110525273
XM_036989711.1 mRNA downstream 4370 54044813 ~ 54089850 (+) False LOC110525327
XR_005051448.1 mRNA downstream 202378 54242821 ~ 54249212 (+) True LOC118964411
XM_021605381.2 mRNA downstream 242496 54282939 ~ 54297286 (+) False LOC110525344
XR_002473740.2 mRNA downstream 242496 54282939 ~ 54297286 (+) True LOC110525344
XM_021605445.2 mRNA downstream 379979 54420422 ~ 54444532 (+) True LOC110525380
TU65626 other upstream 51157 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 368481 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2588819 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 3955758 50037574 ~ 50083996 (+) True LOC118964841
TU59387 other upstream 5145842 48893497 ~ 48893912 (+) True G53181
TU65668 other downstream 4406 54044849 ~ 54062254 (+) False LOC110525327
TU66625 other downstream 680745 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1865065 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 1979033 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 2206141 56246584 ~ 56247770 (+) True G61804

Expression Profile