RNA id: TU65794


Basic Information

Item Value
RNA id TU65794
length 1643
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G59180
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54048948 ~ 54106163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaagtcagttaggacatctacttggtgcatgacaaaagtcatttttccaacaattgtttacagacagattatttcacgtatcattcactgtatcacaattccagtgggtcagaagtttacatacactaagttgactgtggctttaaacagcttggaaatttctagaaaatgatgtcatggctttagaagcttctgatggatGTATTTCATTGCCTACCTTTcaactcagtgcctctctgcttgacattatggggaaatcaaaagaaatcagccaagacctcagaaaaaatttttagacctccacaactgtctgggtggctggtctcagacgatcccacaggtgaagaagacagatgtggaggtcctgggctggtgtggttacacgtggtctgcaattgtgaggctggttggaagtactgctaaattctctaaaatgactgaGGCTGTttacggtagagaaattaacattaaattctctgtcaacagctctggtggaaatttatgcagtcagcatgtcaattgcacattccctcaaaactagacatctgtggcattgtgttgtgtgacaaacctgcacatttgagagtggccttttattgtccccaggacaaggtgcacttgtgtaatgatcacgctgttAAATcatcttaatatgccacacctgtcacgtggacagattatcttgacaaatgtgtgcacataatttgagagaaataagctgtgTGGATATGGGACACTTCTGGGatctttcagctcatgaaatatgggaccaatactttacatgttgcgtttatatttttgttgagtatatatgctagggatgtgacaaatgtaaaaaaatatatataataatcttAACGTTTTAACTGATTTCATCAAATTACATGAATTCATATGGTCCTGTGTATGACTGCTAGGTGGCAGTGCAGTTAAATCTACCGCAGTCCTGGCTACCTACCAGATGGCACTAAACTTACTGTTGTCCCCCACCCACTCAGCAACAATGATATGAATGCAGTTTTAGGTTCTTTGTTGTGTGCCTCCGCTCCATGTTCTCAGTACGTGGGACATCTCCTCAATGTGATGGCTTGTTGGAGTGATGTGTGACAGGGTGTTCATAGACGTCCAACAATCTGTACAGAGCACAGAGCTTGCGCTTTGTACTTGCAGAGCAAGGTTTGGTTTTTGATGGCATCTTGTAGTCTGGTTCTAGATATGCCCTTATGGTATTGAAGCAGACATCCTCTACCATTGACAATGGCTGCATATCAACTGCAATCTTTCCTGTAATCAGCACTGTGATTCTCACGCTGTCCCTTATCGCACCGATGCCAGCAAAGGGTTGGGAATCACAGTGCCTCCCTTTCAGCATTGCACCTGTACTGCCACTGTAGCTCAAATCCACCTTGCAAAGTTTGCATTTCATcaccttctcatttaacttctcaaAATGTATTGCCATACAGGACTTCGCTGCAGTTGATTCCCTGTCTCTCACTGTGACATTTTTCCAACTGTTAACGAGGACTTGGGGAGCGCTTTATATACATggcaaatcatttaaaaaaaatgcatatcTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65800 lncRNA downstream 60462 53987981 ~ 53988486 (-) True G59185
TU65796 lncRNA downstream 61158 53986539 ~ 53987790 (-) True G59181
TU65804 lncRNA downstream 64124 53984637 ~ 53984824 (-) True G59189
TU65808 lncRNA downstream 65674 53982902 ~ 53983274 (-) True G59193
TU65814 lncRNA downstream 72838 53975826 ~ 53976110 (-) True G59199
TU66259 lncRNA upstream 8377 54114540 ~ 54114892 (-) False LOC110525336
TU66261 lncRNA upstream 12489 54118652 ~ 54118876 (-) True G59626
TU66262 lncRNA upstream 13645 54119808 ~ 54120128 (-) True G59627
TU66263 lncRNA upstream 14158 54120321 ~ 54120633 (-) True G59628
TU66265 lncRNA upstream 16362 54122525 ~ 54122866 (-) True G59630
XM_021605344.2 mRNA downstream 29398 53989527 ~ 54019550 (-) True LOC110525320
XR_005051434.1 mRNA downstream 174712 53872120 ~ 53874236 (-) True LOC118964352
XR_005051433.1 mRNA downstream 174923 53872120 ~ 53874025 (-) False LOC118964352
XR_005051444.1 mRNA downstream 174923 53872120 ~ 53874025 (-) False LOC118964352
XM_036980365.1 mRNA downstream 180858 53853860 ~ 53868090 (-) True LOC110525263
XM_036980395.1 mRNA upstream 6976 54113139 ~ 54223986 (-) False LOC110525336
XM_036980399.1 mRNA upstream 6976 54113139 ~ 54223986 (-) False LOC110525336
XM_036980401.1 mRNA upstream 6976 54113139 ~ 54223986 (-) False LOC110525336
XM_036980403.1 mRNA upstream 6976 54113139 ~ 54223986 (-) False LOC110525336
XM_036980407.1 mRNA upstream 6976 54113139 ~ 54223986 (-) False LOC110525336
TU65545 other downstream 251934 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 286052 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 460178 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 622632 53425964 ~ 53426316 (-) True G58718
TU65227 other downstream 710561 53336609 ~ 53338387 (-) True LOC110525078
TU66641 other upstream 622968 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 964229 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 1044078 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 1087134 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 1097254 55203417 ~ 55203742 (-) True G60624

Expression Profile