RNA id: TU65878


Basic Information

Item Value
RNA id TU65878
length 210
lncRNA type intronic
GC content 0.46
exon number 1
gene id G59262
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54133759 ~ 54133968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCGTACCATTTACATTGAATAGATTAGAACATACAAGCATCAAATATAGGCCAGCTCAGGAATCCATATTAACATGTACAGggaactgccaaaataaaggaaacacttgagtaaatgagggatacaaagtaagCAGatacttccacacaggtgtggttcctgagttaattaagcaattaacatcccaccATGCTTAGGGTCaagtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65872 lncRNA upstream 10521 54122952 ~ 54123238 (+) True G59256
TU65871 lncRNA upstream 13075 54120452 ~ 54120684 (+) True G59255
TU65669 lncRNA upstream 71124 54061717 ~ 54062635 (+) True LOC110525327
TU65666 lncRNA upstream 91265 54042265 ~ 54042494 (+) True G59071
TU65664 lncRNA upstream 92862 54040675 ~ 54040897 (+) True G59069
TU65879 lncRNA downstream 719 54134687 ~ 54134927 (+) True G59263
TU65881 lncRNA downstream 2247 54136215 ~ 54136481 (+) True G59265
TU65884 lncRNA downstream 6567 54140535 ~ 54140757 (+) True G59268
TU65892 lncRNA downstream 19621 54153589 ~ 54153835 (+) True G59276
TU65895 lncRNA downstream 24684 54158652 ~ 54158904 (+) True G59279
XM_036989711.1 mRNA upstream 43909 54044813 ~ 54089850 (+) False LOC110525327
XM_036980382.1 mRNA upstream 167256 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA upstream 167256 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA upstream 167256 53955904 ~ 53966503 (+) True LOC110525297
XM_021605298.2 mRNA upstream 195283 53913928 ~ 53938476 (+) True LOC110525287
XR_005051448.1 mRNA downstream 108853 54242821 ~ 54249212 (+) True LOC118964411
XM_021605381.2 mRNA downstream 148971 54282939 ~ 54297286 (+) False LOC110525344
XR_002473740.2 mRNA downstream 148971 54282939 ~ 54297286 (+) True LOC110525344
XM_021605445.2 mRNA downstream 286454 54420422 ~ 54444532 (+) True LOC110525380
XM_036980522.1 mRNA downstream 311487 54445455 ~ 54464444 (+) False adal
TU65668 other upstream 71505 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 145162 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 462486 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2682824 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 4049763 50037574 ~ 50083996 (+) True LOC118964841
TU66625 other downstream 587220 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1771540 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 1885508 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 2112616 56246584 ~ 56247770 (+) True G61804
TU68593 other downstream 2115920 56249888 ~ 56252015 (+) True G61806

Expression Profile