RNA id: TU65900


Basic Information

Item Value
RNA id TU65900
length 1169
lncRNA type intronic
GC content 0.36
exon number 1
gene id G59284
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54166287 ~ 54167455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taactaattctttaagaggctcctctgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaaaaggcacctgtccacaacctcaaacagtcacactccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacccgcaccaggctgggaagactgaatctgcaattggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatcttaccccgtggggtcaaaatgatcacaagaacggtgagcaaaaatcccagaaccacacgggggggacctagtgaatgacctgcagagagctgggaccaaagtaacaaagcctaccatcagttacaccctacgccgccagggactcaaatcctacagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcaactggttgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatgcttactgtgaagcatgggggtggaaacatcaagctttgggaccaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattgagtgaaatcctccttccatcagcaaaggcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaaacacactgcccgggcaatgaaggactagcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctctagatctaaacccaatagaaaatctttggagggagttgaaagtctgtgttgcccagcaacagccccaaaacatcactgctctagaggggatctgcatggaggaatgggccaaaataccagcaagtgtgtgaaaactttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaaaggtatttaacaaagtattgagataaacttttgttatttaccaaatacttattttccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65898 lncRNA upstream 4819 54160895 ~ 54161468 (+) True G59282
TU65896 lncRNA upstream 6864 54159222 ~ 54159423 (+) True G59280
TU65895 lncRNA upstream 7383 54158652 ~ 54158904 (+) True G59279
TU65892 lncRNA upstream 12452 54153589 ~ 54153835 (+) True G59276
TU65884 lncRNA upstream 25530 54140535 ~ 54140757 (+) True G59268
TU65901 lncRNA downstream 819 54168274 ~ 54168491 (+) True G59285
TU65907 lncRNA downstream 4557 54172012 ~ 54172224 (+) True G59291
TU65912 lncRNA downstream 13150 54180605 ~ 54181626 (+) True G59296
TU65913 lncRNA downstream 14218 54181673 ~ 54181876 (+) True G59297
TU65915 lncRNA downstream 15526 54182981 ~ 54183379 (+) True G59299
XM_036989711.1 mRNA upstream 76437 54044813 ~ 54089850 (+) False LOC110525327
XM_036980382.1 mRNA upstream 199784 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA upstream 199784 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA upstream 199784 53955904 ~ 53966503 (+) True LOC110525297
XM_021605298.2 mRNA upstream 227811 53913928 ~ 53938476 (+) True LOC110525287
XR_005051448.1 mRNA downstream 75366 54242821 ~ 54249212 (+) True LOC118964411
XM_021605381.2 mRNA downstream 115484 54282939 ~ 54297286 (+) False LOC110525344
XR_002473740.2 mRNA downstream 115484 54282939 ~ 54297286 (+) True LOC110525344
XM_021605445.2 mRNA downstream 252967 54420422 ~ 54444532 (+) True LOC110525380
XM_036980522.1 mRNA downstream 278000 54445455 ~ 54464444 (+) False adal
TU65668 other upstream 104033 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 177690 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 495014 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2715352 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 4082291 50037574 ~ 50083996 (+) True LOC118964841
TU66625 other downstream 553733 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1738053 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 1852021 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 2079129 56246584 ~ 56247770 (+) True G61804
TU68593 other downstream 2082433 56249888 ~ 56252015 (+) True G61806

Expression Profile