RNA id: TU66089


Basic Information

Item Value
RNA id TU66089
length 266
lncRNA type intronic
GC content 0.45
exon number 2
gene id G59459
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54457380 ~ 54458833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaatgccaagagtgtgcaaagctgtcatcaaggcaaaggcctatatacactgctcaaaaaaataaagggaacactcaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacttaggaagcaacactgattgacaataaatgtcacatgctgttgtgcaaatggaatagacaacaggtggaaattatagggaattagcaagacacccccaataaaggagtggttctgcaggtgataaccacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66072 lncRNA upstream 33072 54418685 ~ 54424308 (+) True G59442
TU65999 lncRNA upstream 135771 54319329 ~ 54321609 (+) True G59378
TU65916 lncRNA upstream 272208 54184580 ~ 54185172 (+) True G59300
TU65915 lncRNA upstream 274001 54182981 ~ 54183379 (+) True G59299
TU65913 lncRNA upstream 275504 54181673 ~ 54181876 (+) True G59297
TU66121 lncRNA downstream 45867 54504700 ~ 54505437 (+) True G59489
TU66100 lncRNA downstream 59551 54518384 ~ 54533275 (+) True G59468
TU66158 lncRNA downstream 112111 54570944 ~ 54571156 (+) True G59525
TU66176 lncRNA downstream 134398 54593231 ~ 54594234 (+) True G59542
TU66651 lncRNA downstream 279894 54738727 ~ 54738954 (+) True G59987
XM_021605445.2 mRNA upstream 12848 54420422 ~ 54444532 (+) True LOC110525380
XM_021605381.2 mRNA upstream 160094 54282939 ~ 54297286 (+) False LOC110525344
XR_002473740.2 mRNA upstream 160094 54282939 ~ 54297286 (+) True LOC110525344
XR_005051448.1 mRNA upstream 208168 54242821 ~ 54249212 (+) True LOC118964411
XM_036989711.1 mRNA upstream 367530 54044813 ~ 54089850 (+) False LOC110525327
XM_036980629.1 mRNA downstream 767706 55226539 ~ 55523224 (+) False LOC110532453
XM_036980632.1 mRNA downstream 767706 55226539 ~ 55523224 (+) False LOC110532453
XM_036980637.1 mRNA downstream 767706 55226539 ~ 55523224 (+) False LOC110532453
XM_036989714.1 mRNA downstream 1103587 55562420 ~ 55671844 (+) True LOC110532459
XM_021605644.2 mRNA downstream 1215253 55674086 ~ 55738417 (+) False LOC110525494
TU65668 other upstream 395126 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 468783 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 786107 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 3006445 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 4373384 50037574 ~ 50083996 (+) True LOC118964841
TU66625 other downstream 262355 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1446675 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 1560643 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 1787751 56246584 ~ 56247770 (+) True G61804
TU68593 other downstream 1791055 56249888 ~ 56252015 (+) True G61806

Expression Profile