RNA id: TU66100



Basic Information


Item Value
RNA id TU66100
length 699
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G59468
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54518384 ~ 54533275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGCGAACAGTTAACATTTAATATTGCCTACAACTTTCTTACAAATTCCCAAACTTACATGTACTTTTGCTAACTACATTGGTtcgccatttaaaaaaaaactcacaTTTCTAAGGATGGCAAAGGAACGTGACCAGTTGAGCTATCAAAATATGTATAACTTTGTCCATTTATAACTCAAAAGTGCAAATTAACGTCAATGTCAAAAATGTTGACCTTGGTCGACGGTCTGCTCCTCTGCCAACTCCACTACTGCTTCCAACTGCTGctcctcatccttctcctcctcacaCACTCCATTCTGGTGGGACTGGGCTTTGTCAAAGTACCCGCTTAGCAGCACCCGGTCCAGGCTGTCCTTCAGAGCTTTGTATGTTGTTCCTGCTGCAGCCTTGTCCTTCCCCTCCAACAGATCCATGAAGTGTTGAGAAGCCTCTTCGTACTGGTCAGACAACTGGCGTTTTGGTCTCGTTCTGGCCCCACTAGTTTGTAAAGCTCATCCAGGTTGGTGAGCTCTGAGTCTGTGAGGAGTGAGGGTGTGCCTCCCCCGGCAGCCCCCTGTCTCAACTCCTGCCTTACACTGTCCTCTCCCAGCCTGTCCAGGAGGAACTGGAGCTCCAGCACAGTCTTCAGTCTTTTctgctcagcctcctctctctggaGCTGCTCCCGCCGCACTGCCTTCTTCACTGCCTTCTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66121 lncRNA upstream 12947 54504700 ~ 54505437 (+) True G59489
TU66089 lncRNA upstream 59551 54457380 ~ 54458833 (+) True G59459
TU66072 lncRNA upstream 94076 54418685 ~ 54424308 (+) True G59442
TU65999 lncRNA upstream 196775 54319329 ~ 54321609 (+) True G59378
TU65916 lncRNA upstream 333212 54184580 ~ 54185172 (+) True G59300
TU66158 lncRNA downstream 37669 54570944 ~ 54571156 (+) True G59525
TU66176 lncRNA downstream 59956 54593231 ~ 54594234 (+) True G59542
TU66651 lncRNA downstream 205452 54738727 ~ 54738954 (+) True G59987
TU66674 lncRNA downstream 221942 54755217 ~ 54755442 (+) True G60010
TU66733 lncRNA downstream 270362 54803637 ~ 54803875 (+) True G60067
XM_021605468.2 mRNA upstream 53938 54445456 ~ 54464446 (+) False adal
XM_021605484.2 mRNA upstream 53938 54450242 ~ 54464446 (+) True adal
XM_021605511.2 mRNA upstream 53940 54445456 ~ 54464444 (+) False adal
XM_036980629.1 mRNA downstream 693264 55226539 ~ 55523224 (+) False LOC110532453
XM_036980632.1 mRNA downstream 693264 55226539 ~ 55523224 (+) False LOC110532453
XM_036980637.1 mRNA downstream 693264 55226539 ~ 55523224 (+) False LOC110532453
XM_036989714.1 mRNA downstream 1029145 55562420 ~ 55671844 (+) True LOC110532459
XM_021605644.2 mRNA downstream 1140811 55674086 ~ 55738417 (+) False LOC110525494
TU65668 other upstream 456130 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 529787 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 847111 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 3067449 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 4434388 50037574 ~ 50083996 (+) True LOC118964841
TU66625 other downstream 187913 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1372233 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 1486201 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 1713309 56246584 ~ 56247770 (+) True G61804
TU68593 other downstream 1716613 56249888 ~ 56252015 (+) True G61806

Expression Profile