RNA id: TU66625



Basic Information


Item Value
RNA id TU66625
length 276
RNA type TUCP
GC content 0.55
exon number 1
gene id G59963
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54721188 ~ 54721463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gcacactggcCTATCCCagatggacaagaggaatacctacgtcagaatgctgttcattgactatagctcagccttcaacaccatagtaccctccaacccttctctttgcaactgggtcctggacttcctgacgggccatccccaggtggtgaaggtaggaaacaacacctccacttcggtGATCCCCAAAACAGCAGgccctcaagggtgcgtgctcagcaccctcctgtactccctgttcactcatgactgcgtggcgacgcacgcctccaactc

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66176 lncRNA upstream 126954 54593231 ~ 54594234 (+) True G59542
TU66158 lncRNA upstream 150032 54570944 ~ 54571156 (+) True G59525
TU66100 lncRNA upstream 187913 54518384 ~ 54533275 (+) True G59468
TU66121 lncRNA upstream 215751 54504700 ~ 54505437 (+) True G59489
TU66089 lncRNA upstream 262355 54457380 ~ 54458833 (+) True G59459
TU66651 lncRNA downstream 17264 54738727 ~ 54738954 (+) True G59987
TU66674 lncRNA downstream 33754 54755217 ~ 54755442 (+) True G60010
TU66733 lncRNA downstream 82174 54803637 ~ 54803875 (+) True G60067
TU66736 lncRNA downstream 83662 54805125 ~ 54805415 (+) True G60070
TU66741 lncRNA downstream 85889 54807352 ~ 54807582 (+) True G60075
XM_021605468.2 mRNA upstream 256742 54445456 ~ 54464446 (+) False adal
XM_021605484.2 mRNA upstream 256742 54450242 ~ 54464446 (+) True adal
XM_036980522.1 mRNA upstream 256744 54445455 ~ 54464444 (+) False adal
XM_021605511.2 mRNA upstream 256744 54445456 ~ 54464444 (+) False adal
XM_021605493.2 mRNA upstream 256744 54445457 ~ 54464444 (+) False adal
XM_036980629.1 mRNA downstream 505076 55226539 ~ 55523224 (+) False LOC110532453
XM_036980632.1 mRNA downstream 505076 55226539 ~ 55523224 (+) False LOC110532453
XM_036980637.1 mRNA downstream 505076 55226539 ~ 55523224 (+) False LOC110532453
XM_036989714.1 mRNA downstream 840957 55562420 ~ 55671844 (+) True LOC110532459
XM_021605644.2 mRNA downstream 952623 55674086 ~ 55738417 (+) False LOC110525494
TU65668 other upstream 658934 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 732591 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 1049915 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 3270253 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 4637192 50037574 ~ 50083996 (+) True LOC118964841
TU67933 other downstream 1184045 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 1298013 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 1525121 56246584 ~ 56247770 (+) True G61804
TU68593 other downstream 1528425 56249888 ~ 56252015 (+) True G61806
TU70898 other downstream 3445102 58166565 ~ 58168178 (+) True G63958

Expression Profile