RNA id: TU66736



Basic Information


Item Value
RNA id TU66736
length 291
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G60070
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54805125 ~ 54805415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tatctgtacttactggtggcacagacgctgtttcatcctttcctacactgaaattacccttgcctaacgattgcgtctgaagctgggcttgttctcctgtatattatgagtacagcgactgcaattagaaggcatcatgttaatgttactacttagcttcggctgttggaggtcctgacgaaccatgtccagataaagtgtCCGGAGtaaaaaagttgaaaaaaaaatacataaagcctaagtctcacacactcacatgcacacacatatttaaacaaaaaaactaaaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66733 lncRNA upstream 1250 54803637 ~ 54803875 (+) True G60067
TU66674 lncRNA upstream 49683 54755217 ~ 54755442 (+) True G60010
TU66651 lncRNA upstream 66171 54738727 ~ 54738954 (+) True G59987
TU66176 lncRNA upstream 210891 54593231 ~ 54594234 (+) True G59542
TU66158 lncRNA upstream 233969 54570944 ~ 54571156 (+) True G59525
TU66741 lncRNA downstream 1937 54807352 ~ 54807582 (+) True G60075
TU66928 lncRNA downstream 239772 55045187 ~ 55045920 (+) True G60257
TU66934 lncRNA downstream 246560 55051975 ~ 55052301 (+) True G60263
TU66945 lncRNA downstream 264441 55069856 ~ 55070061 (+) True G60274
TU66946 lncRNA downstream 265137 55070552 ~ 55070849 (+) True G60275
XM_021605468.2 mRNA upstream 340679 54445456 ~ 54464446 (+) False adal
XM_021605484.2 mRNA upstream 340679 54450242 ~ 54464446 (+) True adal
XM_021605511.2 mRNA upstream 340681 54445456 ~ 54464444 (+) False adal
XM_036980629.1 mRNA downstream 421124 55226539 ~ 55523224 (+) False LOC110532453
XM_036980632.1 mRNA downstream 421124 55226539 ~ 55523224 (+) False LOC110532453
XM_036980637.1 mRNA downstream 421124 55226539 ~ 55523224 (+) False LOC110532453
XM_036989714.1 mRNA downstream 757005 55562420 ~ 55671844 (+) True LOC110532459
XM_021605644.2 mRNA downstream 868671 55674086 ~ 55738417 (+) False LOC110525494
TU66625 other upstream 83662 54721188 ~ 54721463 (+) True G59963
TU65668 other upstream 742871 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 816528 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 1133852 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 3354190 51449822 ~ 51450935 (+) True LOC110524575
TU67933 other downstream 1100093 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 1214061 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 1441169 56246584 ~ 56247770 (+) True G61804
TU68593 other downstream 1444473 56249888 ~ 56252015 (+) True G61806
TU70898 other downstream 3361150 58166565 ~ 58168178 (+) True G63958

Expression Profile