RNA id: TU67198


Basic Information

Item Value
RNA id TU67198
length 508
RNA type TUCP
GC content 0.42
exon number 1
gene id G60516
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55070392 ~ 55070899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agatggaggtgcagtggcttcaaaacagcgcctcctgtcagtcatctagtgtatatgcACTGTGTGTACAAAACAAGAAGAACACTTTTCTAATGTTGAGTTGCACTCAACCctcttttgccttcagaacagccttaattcgttggggcatggagtctacaaggtgtcgaaggtgttccacaggaatgctggcccacgttgacgccaatgcttcccacagttgtgtcaagttgctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcccaggccgtcattgaaaataagaatttgttcttaactgacttgcctggttaaataaaggtaaaaaaaaaataaaataaaaaaaaaaaaaataaaaaaagttgactggatgtcatatgggttgtggaccattcttgataaacacaggCAGAAAGAGCTGTCATCTTTGTGTATGAGGATATGCTACCTTTGAAACATAGGTACTGGACCACGAACTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67199 lncRNA downstream 547 55069610 ~ 55069845 (-) True G60517
TU67187 lncRNA downstream 26269 55043855 ~ 55044123 (-) True G60506
TU67159 lncRNA downstream 54744 55011079 ~ 55015648 (-) True G60478
TU66763 lncRNA downstream 245547 54824634 ~ 54824845 (-) True G60097
TU66762 lncRNA downstream 246757 54823429 ~ 54823635 (-) True G60096
TU67137 lncRNA upstream 728 55071627 ~ 55081078 (-) True LOC110525476
TU67265 lncRNA upstream 99516 55170415 ~ 55170726 (-) True G60580
TU67273 lncRNA upstream 109011 55179910 ~ 55180197 (-) True G60588
TU67308 lncRNA upstream 132141 55203040 ~ 55203262 (-) True G60623
TU67314 lncRNA upstream 135120 55206019 ~ 55206260 (-) True G60629
XR_005052176.1 mRNA downstream 36133 54978911 ~ 55034259 (-) True LOC118964914
XR_005052177.1 mRNA downstream 103839 54963456 ~ 54966553 (-) True LOC110525471
XM_021605592.2 mRNA downstream 135748 54905357 ~ 54934644 (-) True LOC110525462
XM_036980594.1 mRNA downstream 198067 54830826 ~ 54872325 (-) True LOC110525455
XM_036980597.1 mRNA downstream 198739 54830826 ~ 54871653 (-) False LOC110525455
XM_021605612.2 mRNA upstream 680 55071579 ~ 55128270 (-) False LOC110525476
XM_021605620.2 mRNA upstream 680 55071579 ~ 55128270 (-) False LOC110525476
XR_002473762.2 mRNA upstream 680 55071579 ~ 55128270 (-) False LOC110525476
XM_036980645.1 mRNA upstream 673508 55744407 ~ 55801039 (-) True LOC110525505
XM_036980672.1 mRNA upstream 830998 55901897 ~ 56127796 (-) False LOC110525190
TU66641 other downstream 333148 54729131 ~ 54737244 (-) True G59978
TU65545 other downstream 1273378 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 1307496 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 1481622 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 1644076 53425964 ~ 53426316 (-) True G58718
TU67257 other upstream 79342 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 122398 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 132518 55203417 ~ 55203742 (-) True G60624
TU68326 other upstream 761926 55832825 ~ 55833360 (-) False G61563
TU68495 other upstream 1082531 56153430 ~ 56153918 (-) True G61715

Expression Profile