RNA id: TCONS_00026625


Basic Information

Item Value
RNA id TCONS_00026625
length 630
RNA type processed_transcript
GC content 0.46
exon number 2
gene id XLOC_013509
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32525411 ~ 32527104 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccaAAACTCCTATTGACTCCGGCGGGAGTCAGAGCTTAGGGTGATGTTAATGTGGAGGAAGGAGGTTGGATGAGAGTCAAAAACAATGAGTAAAGAGCTGGTAGAAAACAGTAAGGCACTCAATTCTGGCAAGTGGAAAGGGGAGAGCTGCTGGGAGTAATATGATTATTATCCAGAAATACACAATATAATACATGAAATACAAATGGACTACTATGCAGAATAAACACAATGTAGACATTTTATCAATAActatatggaaaacaaataaactggtGCAGCGGAAGCACTCCACACTGGAATGGGAAAAGAAGTGGGCAAGGggtaaagagctaggagggaacagCGGAATTACTCAACGCTGGCAGGGGGAAAAGAAAGGAGAGGGTGATAGGGTAGGCTCTTGTCAGAGCCAAAGCTCATGTTGACCCCTGCGAAatctgagcttagggtgatgctGATGTAGCGAGGAGATTACATGAGAGTCAAAGGCAGGGAGTAAAGAACTAGGAGGAAACAGCAGAGGAACTCAATGCTGGCAGGGGGAACAGAAAGAGGGTCATGTTAAGCTCTGCGAGAGCTGAAGCTCATATTTACTCCAGCGGGAGTCTGAGCCGTGAGGGGGTTTGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000167765

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027361 lncRNA downstream 215848 32308476 ~ 32309563 (-) True XLOC_013508
TCONS_00026624 lncRNA downstream 377781 32146708 ~ 32147630 (-) True XLOC_013507
TCONS_00026975 lncRNA downstream 483049 32039501 ~ 32042362 (-) True XLOC_013505
TCONS_00027360 lncRNA downstream 516355 32005058 ~ 32009056 (-) False XLOC_013504
TCONS_00026622 lncRNA downstream 516355 32008301 ~ 32009056 (-) True XLOC_013504
TCONS_00027362 lncRNA upstream 255509 32782613 ~ 32814481 (-) False XLOC_013511
TCONS_00027363 lncRNA upstream 278680 32805784 ~ 32814560 (-) False XLOC_013511
TCONS_00027364 lncRNA upstream 281841 32808945 ~ 32815354 (-) True XLOC_013511
TCONS_00027365 lncRNA upstream 369461 32896565 ~ 32899998 (-) True XLOC_013512
TCONS_00026976 lncRNA upstream 510730 33037834 ~ 33039857 (-) True XLOC_013513
TCONS_00026623 mRNA downstream 385517 32135370 ~ 32139894 (-) True XLOC_013506
TCONS_00026618 mRNA downstream 555472 31965347 ~ 31969939 (-) True XLOC_013503
TCONS_00026617 mRNA downstream 608566 31912759 ~ 31916845 (-) True XLOC_013502
TCONS_00026616 mRNA downstream 1101842 31299076 ~ 31423569 (-) True XLOC_013499
TCONS_00026615 mRNA downstream 1297796 31226288 ~ 31227615 (-) True XLOC_013498
TCONS_00026626 mRNA upstream 147108 32674212 ~ 32677755 (-) False XLOC_013510
TCONS_00026627 mRNA upstream 147132 32674236 ~ 32709328 (-) False XLOC_013510
TCONS_00026628 mRNA upstream 178361 32705465 ~ 32709297 (-) True XLOC_013510
TCONS_00026630 mRNA upstream 547614 33074718 ~ 33080454 (-) True XLOC_013515
TCONS_00026631 mRNA upstream 553739 33080843 ~ 33085006 (-) True XLOC_013516
TCONS_00026611 other downstream 1669876 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 2606306 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 2627050 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026594 other downstream 3217770 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026593 other downstream 3312162 29213133 ~ 29213249 (-) True XLOC_013483
TCONS_00026632 other upstream 563339 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026656 other upstream 3046077 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 3928203 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 4882719 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 6659070 39186174 ~ 39188401 (-) True XLOC_013560

Expression Profile

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