RNA id: TU67294


Basic Information

Item Value
RNA id TU67294
length 214
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G60609
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55191672 ~ 55191885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAACATTAACTCCTTCGTTTTGGGGACTCCATAGAATACACCGATATCGATCCTGCTAGATTGATCAACTAACACCCTTATGCAAACATTTCTGTCTCAAACACAGGCCCCCTATGTACTTTGCCTCTGGCCACAAATACATTTTCACATAAATCattccatctaacccataacacgtTAGTCACTACAGCTAGtccacctacagtatatagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67278 lncRNA upstream 7767 55183667 ~ 55183905 (+) True G60593
TU67272 lncRNA upstream 15244 55176214 ~ 55176428 (+) True G60587
TU66900 lncRNA upstream 117796 55071620 ~ 55073876 (+) True G60229
TU66946 lncRNA upstream 120823 55070552 ~ 55070849 (+) True G60275
TU66945 lncRNA upstream 121611 55069856 ~ 55070061 (+) True G60274
TU67298 lncRNA downstream 1373 55193258 ~ 55193605 (+) True G60613
TU67316 lncRNA downstream 14778 55206663 ~ 55206882 (+) True G60631
TU67319 lncRNA downstream 17433 55209318 ~ 55209673 (+) True G60634
TU67323 lncRNA downstream 19999 55211884 ~ 55212151 (+) True G60638
TU67337 lncRNA downstream 328120 55520005 ~ 55523230 (+) True LOC110532453
XM_021605468.2 mRNA upstream 727226 54445456 ~ 54464446 (+) False adal
XM_021605484.2 mRNA upstream 727226 54450242 ~ 54464446 (+) True adal
XM_021605511.2 mRNA upstream 727228 54445456 ~ 54464444 (+) False adal
XM_036980629.1 mRNA downstream 34654 55226539 ~ 55523224 (+) False LOC110532453
XM_036980632.1 mRNA downstream 34654 55226539 ~ 55523224 (+) False LOC110532453
XM_036980637.1 mRNA downstream 34654 55226539 ~ 55523224 (+) False LOC110532453
XM_036989714.1 mRNA downstream 370535 55562420 ~ 55671844 (+) True LOC110532459
XM_021605644.2 mRNA downstream 482201 55674086 ~ 55738417 (+) False LOC110525494
TU66625 other upstream 470209 54721188 ~ 54721463 (+) True G59963
TU65668 other upstream 1129418 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 1203075 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 1520399 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 3740737 51449822 ~ 51450935 (+) True LOC110524575
TU67933 other downstream 713623 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 827591 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 1054699 56246584 ~ 56247770 (+) True G61804
TU68593 other downstream 1058003 56249888 ~ 56252015 (+) True G61806
TU70898 other downstream 2974680 58166565 ~ 58168178 (+) True G63958

Expression Profile