RNA id: TCONS_00026626


Basic Information

Item Value
RNA id TCONS_00026626
length 2573
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_013510
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 32674212 ~ 32709328 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGATGCAGTTGAGCTcatttttcaagatgcttctctATCTTTGCACGCTTCTGCTTTTTTTTAAGCTTAAAGTAAGTGTGGGAAATGCTTCTTGCAAAATAATGGGAGAACCGAAGTACCCTCTGCTTTTCAAGGATGGAGATGTGACTATTGGGGCACTTTTTCCAGTCCACAGCATAGAGACAGCACCTTCATTTGAGTTCACACAAAAACCTCAGCTTTTATCTTGCTCCAGTGTGAATCTGAGAGATTTTCGTCTGGCTCAAATCCTGATCTTTGCTATTGAGGAGATAAACAGAAGTGAAAGCTTGCTCCCAAAACTTTCCCTTGGCTACAAGATTTATGATACCTGTAGCTCAAAATTGTCTTCCATGAGTGCAACTATGGCATTGATGAATAGTTTTGAATTTGCAGGAAGAGACAAATGCAACGGGCAGACTTCTGTACATGCTATCATTGGAGAAACAGAGTCTTCTGCCACAGTGATCTTGACCAGAACCACAGGACCTTTCAAAATTCCAGTGATAAGTCATGCAGCCTCCTGTGAATGTCTGAGTAGCAGGAAAGAGTATCCGTCATTCTTCAGGACTATTTCTAGTGATTACCATCAAGGTAGAGCACTTGCATACATTGTCAAGCACTTGGGCTGGTCTTGGGTGGGAGCTGTGAACAGTGACAATGACTATGGGAATTATGGAATGGCCATATTTCTTAATACAGCCCATAAAGAGGGAATTTGTGTGGAGTACTCTGAGAAATTCTACAGGACAGAGCCTGAGAAACTAAAAAAGGTGGTAGACACAATTAAAAAGAGCACTGCAAAAGTTATTGTtgcatttatttcatttcttGAAATGAGATTACTTGTTGAGCAGTTAAGTGCTGAAAACATTACAGGCCTCCAAATAGTTGGTGTGGAGGGATGGACAACTTCAAAGAGTTTGATTACTCCAAAAACATTAAATGTGCTGAGAGGGTCACTGGGTTTTGCAATGAGAAAAATTTATATTGAAGGCTTTGCAGAATATGTTTTAAAACCCTTCTGGGACACAGCTTTTCCATGCATACCGAATCAGAGGAATGATTCTTGGGTCATATTAAATTGCAGCAGATATCAGGATCTTCTTGTTCTGAAAAATTACATTGAAGATGTCCCTGAACATAGATTTTCAATAAATGTCTACAACGCAGTTTATGCTGTGGCTCATGCACTGCACAGTCTATTTAAGTGCAAAGAACAAGAGGGTTGTGAAAAAGACCTGTTGACACAACCACAGCAGgTAGTTGATGCTCTGAAAAAAGTCAATTTTACTGTAAAGATGGGAGATCGTGTGTGGTTTGACAGCACTGGTGCAACACTAGCCCAATATGAGGTTGTGAACTGGCAGCAGAACTCTGATGGATCAGTCAATTTTAAAAAAGTGGGATACTATGATGCCTCTCTGCCTCCTGACCAGCGCTTTGTGCTCAACATTAAAGAGATACTTTGGGCAGGAGGAAACCTGAAGAAGCCAAGATCTGTGTGCAGTGAGAGCTGTCCTCCAGGCACCAGGAAGGCTGCACAGAAAGGAAGACCTATCTGCTGTTATGACTGTATTCCATGTGCAGATGGAGAAATCAGTAACGACACAGATTCAAATAACTGCAAGCAGTGTCAAGGGGAATACTGGTCTAATgctgataaaaataaatgtgttcaaAAGTCGGTAGAGTTTCTGTCATTTACAGAGGTTATGGGTATAGTGCTTGTTTTTTTCTCACTATTTGGAGCAGGATTAACTGTGCTGGTGGCCATTCTCttttacagcaagaaggacactCCCATAGTAAAAGCCAACAACTCAGAGTTGAGCTTCCTGCTGCTCTTCTCACTGACCCTGTGTTTCCTCTGTTCACTTACTTTCATTGGTCAGCCCACTCAATGGTCATGTATGTTGCGTCACACAGCTTTTGGGATCACTTTTGTCCTTTGTATTTCCTGTGTTTTAGGGAAAACATTACTGGTGTTAATGGCCTTCAAAGCTACACTTCCAGGAAGTAATATCATGAAATGGTTTGGGCCTGTACAACAACGACTAAGTGTTCTTGCTTTTACATTTATACAAGTTTTAATCTGTGTGTTATGGCTATCAATATCTCCACCATTTCCccacaaaaatatgaaatattatgaaGAGAAGATCATTCTTGAGTGCAGTTTAGGTTCTACTATAGGTTTCTGGGCTATTTTGGGATATATTGGCCTACTGGCTGCGTTGTGCTTCATTCTGGCTTTTCTGGCTAGGACACTTCCTGATAATTTCAATGAGGCCAAATTCATCACATTCAGTATGCTTATATTTTGTGCTGTATGGATCACTTTTATTCCAGCTTATGTTAGTTCTCCTGGAAAATTCACTGTAGCTGTGGAGATATTTGCCATTTTATCTTCAAGCATTAGTTTACTATTGTGCATTTTTGCACCCAAATGTTATATAATCCTTCTTAAGCCTGAACAAAATACAAAGCAATACATGTTGGGAAAAACAACATCTAAGTTCTActgatacaaaataaataaattaaaataa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081029-6 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000168362

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027361 lncRNA downstream 364649 32308476 ~ 32309563 (-) True XLOC_013508
TCONS_00026624 lncRNA downstream 526582 32146708 ~ 32147630 (-) True XLOC_013507
TCONS_00026975 lncRNA downstream 631850 32039501 ~ 32042362 (-) True XLOC_013505
TCONS_00027360 lncRNA downstream 665156 32005058 ~ 32009056 (-) False XLOC_013504
TCONS_00027362 lncRNA upstream 104858 32782613 ~ 32814481 (-) False XLOC_013511
TCONS_00027363 lncRNA upstream 128029 32805784 ~ 32814560 (-) False XLOC_013511
TCONS_00027364 lncRNA upstream 131190 32808945 ~ 32815354 (-) True XLOC_013511
TCONS_00027365 lncRNA upstream 218810 32896565 ~ 32899998 (-) True XLOC_013512
TCONS_00026976 lncRNA upstream 360079 33037834 ~ 33039857 (-) True XLOC_013513
TCONS_00026623 mRNA downstream 534318 32135370 ~ 32139894 (-) True XLOC_013506
TCONS_00026618 mRNA downstream 704273 31965347 ~ 31969939 (-) True XLOC_013503
TCONS_00026617 mRNA downstream 757367 31912759 ~ 31916845 (-) True XLOC_013502
TCONS_00026616 mRNA downstream 1250643 31299076 ~ 31423569 (-) True XLOC_013499
TCONS_00026615 mRNA downstream 1446597 31226288 ~ 31227615 (-) True XLOC_013498
TCONS_00026628 mRNA upstream 27710 32705465 ~ 32709297 (-) True XLOC_013510
TCONS_00026630 mRNA upstream 396963 33074718 ~ 33080454 (-) True XLOC_013515
TCONS_00026631 mRNA upstream 403088 33080843 ~ 33085006 (-) True XLOC_013516
TCONS_00026633 mRNA upstream 412728 33090483 ~ 33093705 (-) True XLOC_013517
TCONS_00026634 mRNA upstream 571241 33248996 ~ 33254039 (-) False XLOC_013518
TCONS_00026625 other downstream 147108 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 1818677 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 2755107 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 2775851 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026594 other downstream 3366571 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026632 other upstream 412688 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026656 other upstream 2895426 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 3777552 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 4732068 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 6508419 39186174 ~ 39188401 (-) True XLOC_013560

Expression Profile

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