RNA id: TU67625


Basic Information

Item Value
RNA id TU67625
length 1066
lncRNA type intronic
GC content 0.40
exon number 2
gene id G60918
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55415676 ~ 55416790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTACCTTTATGTTAGCTAGTTACAATGAcggtaagctgtcattgtaaataagaatttgttgttaactgacttgccttgttatgtaaaggttaaataaaaaacatttaaaacatttaccTAACGTTAGTTTCCTACTAATACATCGAACTTGCcaggcagtatattaactatctgctatctaactaactaccaaACATTTATTGGCTTGATCATTTACATCCctactgtcacgttcgtcgtaaagaggagaccaaggcgcagcatgatgAGAATACATTCCTCTTTATTAAaggaagaacacttaaacaaactaacaacaaaacgaacgtgacgctatatAACACGAGTGCTGaaacaggcaactatacatagacaataacccacaaaatacccaaggaatatggctacctaaatatggtccccaatcagggacaacgataaacagctgcctctgattgagaaccaatctaggcaaccatagacataaaaacacctagactagaaacaaccccataaacaaaacaaaaaccctagacaggacgaaaacacatatatcaccctcgtcacaccctgatataaacaaaataataaagaaaacaaggAATACTAAGGTCAGTGCGTGACAACTAcattcttagctaagtggtatagtcgATCAATTCAATGGAtttctactctgatttcagagcactcttgcgcagaataactgatgaactTATAAACgcacaacacctgttgTTgctagcagcacagttacagtcaccaacgctctggataacatgaaaacagcctaagcAGCtgtgctagggcaagtaaaatggtcagtgagcagTTCTCTCATTTgtttctggaagtagctagccaacgttagcttggttgcttgactgccattgaacgcccggatcaaccctactcctcggccagagcgtccagtgtgcgctctgaacactccaagagcgaaacactctgaatttatgaTTGGAAAATCTTTCAAAGCTCTGGATTTACGAACGCCCAGCACGTAATCTGGCACTCCCTattaaatttacgaacacacccaaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67539 lncRNA downstream 150192 55260989 ~ 55265484 (-) True G60837
TU67331 lncRNA downstream 199975 55215425 ~ 55215701 (-) True G60646
TU67321 lncRNA downstream 205334 55210017 ~ 55210342 (-) True G60636
TU67315 lncRNA downstream 209041 55206401 ~ 55206635 (-) True G60630
TU67314 lncRNA downstream 209416 55206019 ~ 55206260 (-) True G60629
TU67641 lncRNA upstream 9571 55426361 ~ 55428202 (-) True G60933
TU67720 lncRNA upstream 112539 55529329 ~ 55529546 (-) True G61003
TU67723 lncRNA upstream 113751 55530541 ~ 55530745 (-) True G61006
TU67725 lncRNA upstream 114280 55531070 ~ 55531272 (-) True G61008
TU68312 lncRNA upstream 395097 55811887 ~ 55812149 (-) True G61556
XM_021605612.2 mRNA downstream 287406 55071579 ~ 55128270 (-) False LOC110525476
XM_021605620.2 mRNA downstream 287406 55071579 ~ 55128270 (-) False LOC110525476
XR_002473762.2 mRNA downstream 287406 55071579 ~ 55128270 (-) False LOC110525476
XR_005052176.1 mRNA downstream 381417 54978911 ~ 55034259 (-) True LOC118964914
XR_005052177.1 mRNA downstream 449123 54963456 ~ 54966553 (-) True LOC110525471
XM_036980645.1 mRNA upstream 327617 55744407 ~ 55801039 (-) True LOC110525505
XM_036980672.1 mRNA upstream 485107 55901897 ~ 56127796 (-) False LOC110525190
XM_021605162.2 mRNA upstream 485108 55901898 ~ 56147404 (-) False LOC110525190
XM_021605194.2 mRNA upstream 485108 55901898 ~ 56147404 (-) False LOC110525190
XM_036980680.1 mRNA upstream 485109 55901899 ~ 56000300 (-) True LOC110525190
TU67309 other downstream 211934 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 221953 55193297 ~ 55193723 (-) True G60614
TU67257 other downstream 261418 55150241 ~ 55154258 (-) True G60572
TU67198 other downstream 344777 55070392 ~ 55070899 (-) True G60516
TU66641 other downstream 678432 54729131 ~ 54737244 (-) True G59978
TU68326 other upstream 416035 55832825 ~ 55833360 (-) False G61563
TU68495 other upstream 736640 56153430 ~ 56153918 (-) True G61715
TU68821 other upstream 1108180 56524970 ~ 56533975 (-) True G61978
TU70000 other upstream 1618877 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 1635308 57052098 ~ 57062848 (-) False G63093

Expression Profile