RNA id: TU67720


Basic Information

Item Value
RNA id TU67720
length 218
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G61003
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55529329 ~ 55529546 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaaccgcACCGCCCGCaatcgcagggctctccagagggtggtaatgatctgcccaatgcatcaccggggccaaACTACCTGCCGTCCAGGACACCTTCAGCACCTGATTTCACAGGAAGGACGAAAAggtcaaggacatcaaccaccctagcaacagcctgttcaccccactatcatccagaaggcgaggacagtacaggtgcatcaaagatgggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67641 lncRNA downstream 101127 55426361 ~ 55428202 (-) True G60933
TU67625 lncRNA downstream 112539 55415676 ~ 55416790 (-) True G60918
TU67539 lncRNA downstream 263845 55260989 ~ 55265484 (-) True G60837
TU67331 lncRNA downstream 313628 55215425 ~ 55215701 (-) True G60646
TU67321 lncRNA downstream 318987 55210017 ~ 55210342 (-) True G60636
TU67723 lncRNA upstream 995 55530541 ~ 55530745 (-) True G61006
TU67725 lncRNA upstream 1524 55531070 ~ 55531272 (-) True G61008
TU68312 lncRNA upstream 282341 55811887 ~ 55812149 (-) True G61556
TU68276 lncRNA upstream 285860 55815406 ~ 55830189 (-) True G61522
TU68324 lncRNA upstream 303326 55832872 ~ 55833928 (-) True G61563
XM_021605612.2 mRNA downstream 401059 55071579 ~ 55128270 (-) False LOC110525476
XM_021605620.2 mRNA downstream 401059 55071579 ~ 55128270 (-) False LOC110525476
XR_002473762.2 mRNA downstream 401059 55071579 ~ 55128270 (-) False LOC110525476
XR_005052176.1 mRNA downstream 495070 54978911 ~ 55034259 (-) True LOC118964914
XR_005052177.1 mRNA downstream 562776 54963456 ~ 54966553 (-) True LOC110525471
XM_036980645.1 mRNA upstream 214861 55744407 ~ 55801039 (-) True LOC110525505
XM_036980672.1 mRNA upstream 372351 55901897 ~ 56127796 (-) False LOC110525190
XM_021605162.2 mRNA upstream 372352 55901898 ~ 56147404 (-) False LOC110525190
XM_021605194.2 mRNA upstream 372352 55901898 ~ 56147404 (-) False LOC110525190
XM_036980680.1 mRNA upstream 372353 55901899 ~ 56000300 (-) True LOC110525190
TU67309 other downstream 325587 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 335606 55193297 ~ 55193723 (-) True G60614
TU67257 other downstream 375071 55150241 ~ 55154258 (-) True G60572
TU67198 other downstream 458430 55070392 ~ 55070899 (-) True G60516
TU66641 other downstream 792085 54729131 ~ 54737244 (-) True G59978
TU68326 other upstream 303279 55832825 ~ 55833360 (-) False G61563
TU68495 other upstream 623884 56153430 ~ 56153918 (-) True G61715
TU68821 other upstream 995424 56524970 ~ 56533975 (-) True G61978
TU70000 other upstream 1506121 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 1522552 57052098 ~ 57062848 (-) False G63093

Expression Profile