RNA id: TU67730


Basic Information

Item Value
RNA id TU67730
length 208
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G61013
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55534893 ~ 55535100 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctgtctctatctttctcccttaCTACCttgatctctgtctgtctgtctcgctctatgtctctctctccctcccctctctcttgttGTAGAGTTAGGCTACATACATTGATTGGCATCATTTACATGTCGATTCACAGGATATTAATACTATCAACATTGATGTGGATGTGGGACACTGTGATGGACTTCTAGTCCTACTCtagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67337 lncRNA upstream 11663 55520005 ~ 55523230 (+) True LOC110532453
TU67323 lncRNA upstream 322742 55211884 ~ 55212151 (+) True G60638
TU67319 lncRNA upstream 325220 55209318 ~ 55209673 (+) True G60634
TU67316 lncRNA upstream 328011 55206663 ~ 55206882 (+) True G60631
TU67298 lncRNA upstream 341288 55193258 ~ 55193605 (+) True G60613
TU67750 lncRNA downstream 11468 55546568 ~ 55559662 (+) True G61033
TU67860 lncRNA downstream 210988 55746088 ~ 55750306 (+) True G61137
TU67872 lncRNA downstream 226144 55761244 ~ 55767151 (+) True G61147
TU67892 lncRNA downstream 262173 55797273 ~ 55797489 (+) True G61164
TU67896 lncRNA downstream 265450 55800550 ~ 55801438 (+) True G61168
XM_036980629.1 mRNA upstream 11669 55226539 ~ 55523224 (+) False LOC110532453
XM_036980632.1 mRNA upstream 11669 55226539 ~ 55523224 (+) False LOC110532453
XM_036980637.1 mRNA upstream 11669 55226539 ~ 55523224 (+) False LOC110532453
XM_021605468.2 mRNA upstream 1070447 54445456 ~ 54464446 (+) False adal
XM_021605484.2 mRNA upstream 1070447 54450242 ~ 54464446 (+) True adal
XM_036989714.1 mRNA downstream 27320 55562420 ~ 55671844 (+) True LOC110532459
XM_021605644.2 mRNA downstream 138986 55674086 ~ 55738417 (+) False LOC110525494
XM_021605663.2 mRNA downstream 138986 55674086 ~ 55738417 (+) True LOC110525494
XM_021605689.2 mRNA downstream 280271 55815371 ~ 55830186 (+) True LOC110525514
XR_005052193.1 mRNA downstream 441059 55976159 ~ 56024913 (+) True LOC118964919
TU66625 other upstream 813430 54721188 ~ 54721463 (+) True G59963
TU65668 other upstream 1472639 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 1546296 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 1863620 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 4083958 51449822 ~ 51450935 (+) True LOC110524575
TU67933 other downstream 370408 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 484376 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 711484 56246584 ~ 56247770 (+) True G61804
TU68593 other downstream 714788 56249888 ~ 56252015 (+) True G61806
TU70898 other downstream 2631465 58166565 ~ 58168178 (+) True G63958

Expression Profile