RNA id: TU67872


Basic Information

Item Value
RNA id TU67872
length 3564
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G61147
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55761244 ~ 55767151 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTCCAGCGTTCTTGGTGACCACAATGAAAGTGACAGGTTTGTTGATGGACCCTTGACAGAGACCAGGGCCGTATGCTGTCACCAGACCACTGTTCATAGCATCCACATAGAACTGGAGGGGGCTTCCTTACCTGTGATCGGTCCCTGCTGTACAGTGAACGGGATGACCAGGTTGAGAGGGCGGAACTGATCCATGCCGTCACTAAGGACAATGGGCTCCTTTGTTGCCTAAAAGGGCATATGATACATGTACGAGTAACTATAGCAAGCTATGTCTATACAAAGTAAAAATGTAACTTTAATGCAGCCTTTTTGACTCAGTTAAAAATGTTGTTAAACCcttataagacattataaagaTTCATACATGATAACAACAAGTTATAAAGCATTAAGTGAAGTATTACCCAATGTTAGTATTGTCCCCCAGAATgctccacaccactctctcaaCAGACAAGTTATAAAGCATTAAGTGAAGTATTACCCAATGTTAGTATTGTCCCCCAGAATGCTCCACACCACTCTCCCTTCCCCCCAATTTGTGTCTCTGATTCAGGAGAAATGTATTTCTATTCCTGTGATACCCACCTTAAGATCAatacactaactgtaagtcactttggataagagtgtctgctaaatgacaaaaatgtaattttcaGGTAATCAAATTTTTGCTATTTTGTAGCTTTGGCAACTATGTGTCTGTTTTCTACCCCAGTTCgctcctctccctgtaggctatacagacagacactcccCACTCCTTGGCTGCTACCCTAATTTAGTGTACCCTGTGCGCATAACCCATGTGGAATTCCTGGTCTCTGGTAGCGTTTGGAACTGCCGATCTGCAGTCAAGAACGCCCGAGTTCATCTCAGTCTATACTGTGCTTCAGTCCCTTAACTTTTTGGCCCTGATggagacatggatcaccccagaCAACACTACTACTCTAGCTGCTCTCTCGTCATCtgattatgttttatttcatagtccGAGAGCATCTGGTCGTCGTCGTGGTGGCACATGGCTACTCATTTCTCCTAAGTGAatattttgtttttttctccctctctcatctgtccatcccctcatttgaattccatgatgtcactgtcacttgtccactcaagcttaacattgttgtcatctatATATTAAATCCTGCAACTAGTGTGGTCCGAACGCCCGACAACCTACCCGCTCGaccccacctcccctcccatttccagaccatctctggagacccattcctcacttccctcatcaactcatccctgaccactgactgcgtcccctctgacttcaaaatggcctgactctctcgttatctctctcagaacaacCTTCTTGACTCTAACCAGTCATGCTTCAAGATTTGTCACTCAACCGaaactgctcttctctgtgtcatgGAGGCTCTCTAAACTGCCAAAGCTAAATCTctatcctctgttctcatcctcctagatctatccactgCCTTCGACACATTGAAACATCAAATCGACCCTCTCAGGGCTTGGCATCTCTGCACACTCTTGggttgcatcctacctggcaggccgatcctaccaggtgatgtggagaggatctgtgtctgcactaCGTACTTTCAcgactggtgtcccccagggcttggCTCCTTCTCTCTATATACCAAGTCACTGAGCTCCTttatatcctcacatggtctctcctatcattgctatgcagatgacactcaactacttttcttcttccccccttctgacactcaggtggcgacacgcatctctgcgtgcctggcagatatatcagcttggatgtcggcccaccacctcaagctcaacctcgacaagacgaAGCTGCCCTTTTTTCCGGGGAAGGCCTGCCcactcaaagacctctccatcacagttgacaactccacagtgtcccCTTCCCAGAGTGGAAATCCTTTGCCAAGACCcaggacaacaccctgtcgttctctgtcAAAATAAAAGCAGttactcgctcctgcaggtttatgctctacaacatccgtagagtacgaccctacctcacatgAAGTGGTGCAGGTCCTagtccaggcacttgtcatctcccatctggactactgcaactcgatGTGGTCTGGGCTCCCGCTTGTGCCATCATACCCCTGCAACTATTCCAGAATGCTGCAGCCAACCTGGTGTTCAActttcccaagttctcccatgtcaccccactcctccgcacactccactggcttccagcaGAAGCTCgaatccactacaagaccatagTACTTACCAACCGAGTAGCAAGAGGAACTGCTCCTCCCTACCCTTCAgactatgctcaaaccctacacccaaATCCAAGCACTCctttctgccacctctggtctttTGGCTCCCGCTCTtaccagtccaagctcttctctgtcctggcacaccaatggtggaaccagcttctcCCTGTAGCTAGGACAGCAGAGGCCCTACCCAtattctgaaaacatctgaaaccctacctcttgaAAGAGTATCGTAAATAATCCCAGAGCACCCTcgcttactatgactgtgatatgtggttgtcccaactagctacagtatcttattaagatgaatgcactaactgtaagttgtTCTGCGTAAAAACGTCTGCAAAAGACACAGacgtttcttctgaaacttgtcagtctattcttgttctgagaaatgaacgctgtgtgctactcccttcacagaacagcgcaaactggctctaaacaGAATAAAAAGAGGTGTGGGAGGCAACGGAGcaagccttaatttctcagaacaagaatatattgacaagtttcagaagaaagtttctggccattttgagcctgtaatcgaaccctgctgatgctccagatactcaactagtctaaataaggccagtttaattgcttctttaatcaggacaacatttttcagctgtgctaacataattgaaaaaggtttttctaatgatcaattagccttttaaaattggaacacatgagtgatggttgctgataatgggcctatgtacagaggcccattaggtagatattccataaaaatctgccgtttccagctaaaatagtcaattacaacattaataatatgtacactatatatctgatcaatttgatgttattttaatggacaaaaaattggcTTTTCTTTTAAAAtcttagtgaccccaaacttttgaatagtagtgtgtatatatattaatTAACACACAAATCTATATTACTAATATGTACTCAACCGTAACATGGAAGGGGCTCCTGGGTATGTGCTGTCCTCCGAAGCGGATGGTGATGACATATTTTCCTGGTTCTGGAGCGGTGTAGTAGATCTCGAAGGTTCCATCACGGTTCTCCTGCACATCCATGTCTAGCTCCACCCCCTCTGGGGTCATGACCGAGCAGGTCACCTTGCCCTTCCCAGCAGCCTTTGTGTCCACAGAGATGATGGCCTCCTCGTGCAACTGCATCTTAGTCAGACCTGATGCCAGGGCATGTCCTTCGATAGACACTGGGAATAAGGAGAGAGAAATTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67860 lncRNA upstream 10938 55746088 ~ 55750306 (+) True G61137
TU67750 lncRNA upstream 201582 55546568 ~ 55559662 (+) True G61033
TU67730 lncRNA upstream 226144 55534893 ~ 55535100 (+) True G61013
TU67337 lncRNA upstream 238014 55520005 ~ 55523230 (+) True LOC110532453
TU67323 lncRNA upstream 549093 55211884 ~ 55212151 (+) True G60638
TU67892 lncRNA downstream 30122 55797273 ~ 55797489 (+) True G61164
TU67896 lncRNA downstream 33399 55800550 ~ 55801438 (+) True G61168
TU67903 lncRNA downstream 42600 55809751 ~ 55809982 (+) True G61175
TU67915 lncRNA downstream 72011 55839162 ~ 55839841 (+) True G61186
TU67923 lncRNA downstream 129125 55896276 ~ 55896883 (+) True G61194
XM_021605644.2 mRNA upstream 22827 55674086 ~ 55738417 (+) False LOC110525494
XM_021605663.2 mRNA upstream 22827 55674086 ~ 55738417 (+) True LOC110525494
XM_036989714.1 mRNA upstream 89400 55562420 ~ 55671844 (+) True LOC110532459
XM_036980632.1 mRNA upstream 238020 55226539 ~ 55523224 (+) False LOC110532453
XM_021605689.2 mRNA downstream 48220 55815371 ~ 55830186 (+) True LOC110525514
XR_005052193.1 mRNA downstream 209008 55976159 ~ 56024913 (+) True LOC118964919
XM_021605703.2 mRNA downstream 784597 56551748 ~ 56596653 (+) False LOC110525521
XM_021605747.2 mRNA downstream 1127101 56894252 ~ 56904226 (+) True eif3s6ip
XM_036980732.1 mRNA downstream 1268457 57035608 ~ 57062851 (+) False vsir
TU66625 other upstream 1039781 54721188 ~ 54721463 (+) True G59963
TU65668 other upstream 1698990 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 1772647 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 2089971 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 4310309 51449822 ~ 51450935 (+) True LOC110524575
TU67933 other downstream 138357 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 252325 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 479433 56246584 ~ 56247770 (+) True G61804
TU68593 other downstream 482737 56249888 ~ 56252015 (+) True G61806
TU70898 other downstream 2399414 58166565 ~ 58168178 (+) True G63958

Expression Profile