RNA id: TU68312


Basic Information

Item Value
RNA id TU68312
length 263
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G61556
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 55811887 ~ 55812149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgatttgtaggggtccagattttgcagctctttcagaacatcagctggctggatttgggagaaggagaaatggggaaggcttgggcgagttgctgtggggggtgtagtgctgttgaccggggtaggggtagccaggtggaaagcatggccagccgtagaaaaatgcttattgaaattctcaattatagtggatttatcagtggtgacagtgtttcctatcttcagtgcagtgggcagctgggaggaggtgttcttattctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67725 lncRNA downstream 280615 55531070 ~ 55531272 (-) True G61008
TU67723 lncRNA downstream 281142 55530541 ~ 55530745 (-) True G61006
TU67720 lncRNA downstream 282341 55529329 ~ 55529546 (-) True G61003
TU67641 lncRNA downstream 383685 55426361 ~ 55428202 (-) True G60933
TU67625 lncRNA downstream 395097 55415676 ~ 55416790 (-) True G60918
TU68276 lncRNA upstream 3257 55815406 ~ 55830189 (-) True G61522
TU68324 lncRNA upstream 20723 55832872 ~ 55833928 (-) True G61563
TU68329 lncRNA upstream 24147 55836296 ~ 55836551 (-) True G61564
TU68285 lncRNA upstream 26604 55838753 ~ 55839809 (-) True G61529
TU68286 lncRNA upstream 27994 55840143 ~ 55840336 (-) True G61530
XM_036980645.1 mRNA downstream 10848 55744407 ~ 55801039 (-) True LOC110525505
XM_021605612.2 mRNA downstream 683617 55071579 ~ 55128270 (-) False LOC110525476
XM_021605620.2 mRNA downstream 683617 55071579 ~ 55128270 (-) False LOC110525476
XR_002473762.2 mRNA downstream 683617 55071579 ~ 55128270 (-) False LOC110525476
XR_005052176.1 mRNA downstream 777628 54978911 ~ 55034259 (-) True LOC118964914
XM_036980672.1 mRNA upstream 89748 55901897 ~ 56127796 (-) False LOC110525190
XM_021605162.2 mRNA upstream 89749 55901898 ~ 56147404 (-) False LOC110525190
XM_021605194.2 mRNA upstream 89749 55901898 ~ 56147404 (-) False LOC110525190
XM_036980680.1 mRNA upstream 89750 55901899 ~ 56000300 (-) True LOC110525190
XR_002473726.2 mRNA upstream 257056 56069205 ~ 56079673 (-) False LOC110525232
TU67309 other downstream 608145 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 618164 55193297 ~ 55193723 (-) True G60614
TU67257 other downstream 657629 55150241 ~ 55154258 (-) True G60572
TU67198 other downstream 740988 55070392 ~ 55070899 (-) True G60516
TU66641 other downstream 1074643 54729131 ~ 54737244 (-) True G59978
TU68326 other upstream 20676 55832825 ~ 55833360 (-) False G61563
TU68495 other upstream 341281 56153430 ~ 56153918 (-) True G61715
TU68821 other upstream 712821 56524970 ~ 56533975 (-) True G61978
TU70000 other upstream 1223518 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 1239949 57052098 ~ 57062848 (-) False G63093

Expression Profile