RNA id: TU68590



Basic Information


Item Value
RNA id TU68590
length 623
RNA type TUCP
GC content 0.41
exon number 2
gene id G61804
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56246584 ~ 56247770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tacctacccgtgtcctctgcgcgatctcctcttctcttgtgctgacttgtgcaatgtcagcctgcccctcagtccgaggggtgagccgttgtccgttacctacctgtgtcctctgcgcgatctcctcttgtcttgtgctgacattctcttctcttgtgctgacttgtgcaatgtcagcctgcccctcagtccgaggggtgagccgttgtccgttacctacctgtgtcctctgcgcgatctcctcttgtcttgtgctgacattctcttctcttgtgctgacttgtgcaatgtcagcctgcccctcagtccgaggggtgagccgttgtccgttacctaactgtgtcctctgcgcaatctcctcttgtcttgtgctgatattctcttctcttgtgctgacattctcttctcttgtgctgacttgttcaatgtcagcctgcccctcagtccgaggggtgagccgttgtccgttacctacccgtgtcctctgcgcgatctcctcttctcttgtgctgacttgtgcaatgtcagcctgcccctcagtccgaggggtgagccgttgtccgttacctacctgtgtcctctgcgcaatctcctcttgtcttgtgctgatattctcttctctt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68587 lncRNA upstream 6016 56239908 ~ 56240568 (+) True G61802
TU68580 lncRNA upstream 15684 56230532 ~ 56230900 (+) True G61795
TU68560 lncRNA upstream 40036 56206299 ~ 56206548 (+) True G61775
TU68557 lncRNA upstream 42850 56203334 ~ 56203734 (+) True G61772
TU68548 lncRNA upstream 49010 56197337 ~ 56197574 (+) True G61763
TU68628 lncRNA downstream 113587 56361357 ~ 56361656 (+) True G61815
TU68640 lncRNA downstream 138395 56386165 ~ 56387289 (+) True G61827
TU68674 lncRNA downstream 190910 56438680 ~ 56438985 (+) True G61857
TU68675 lncRNA downstream 192004 56439774 ~ 56459034 (+) False G61858
TU68678 lncRNA downstream 209895 56457665 ~ 56459034 (+) True G61858
XR_005052193.1 mRNA upstream 221671 55976159 ~ 56024913 (+) True LOC118964919
XM_021605689.2 mRNA upstream 416398 55815371 ~ 55830186 (+) True LOC110525514
XM_021605644.2 mRNA upstream 508167 55674086 ~ 55738417 (+) False LOC110525494
XM_021605663.2 mRNA upstream 508167 55674086 ~ 55738417 (+) True LOC110525494
XM_036989714.1 mRNA upstream 574740 55562420 ~ 55671844 (+) True LOC110532459
XM_021605703.2 mRNA downstream 303978 56551748 ~ 56596653 (+) False LOC110525521
XM_021605747.2 mRNA downstream 646482 56894252 ~ 56904226 (+) True eif3s6ip
XM_036980732.1 mRNA downstream 787838 57035608 ~ 57062851 (+) False vsir
XM_021605762.2 mRNA downstream 787847 57035617 ~ 57062851 (+) True vsir
XM_036989719.1 mRNA downstream 1374497 57622267 ~ 57765398 (+) True LOC110525562
TU68019 other upstream 216213 56019476 ~ 56030371 (+) True G61284
TU67933 other upstream 323208 55905508 ~ 55923376 (+) True G61202
TU66625 other upstream 1525121 54721188 ~ 54721463 (+) True G59963
TU65668 other upstream 2184330 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 2257987 53988140 ~ 53988597 (+) True G59031
TU68593 other downstream 2118 56249888 ~ 56252015 (+) True G61806
TU70898 other downstream 1918795 58166565 ~ 58168178 (+) True G63958
TU70899 other downstream 1973752 58221522 ~ 58222852 (+) False G63959
TU70900 other downstream 1973752 58221522 ~ 58223130 (+) True G63959
TU71238 other downstream 2339088 58586858 ~ 58587585 (+) True G64292

Expression Profile