RNA id: TU68674


Basic Information

Item Value
RNA id TU68674
length 306
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G61857
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56438680 ~ 56438985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagaaaaaaaatctagaaaaaaaatctagaaaaaaatctagaaaaaaaatctagaaaaaaatctagaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaatctagaaaaaaatctagaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaaatctagaaaaaaaatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68640 lncRNA upstream 51391 56386165 ~ 56387289 (+) True G61827
TU68628 lncRNA upstream 77024 56361357 ~ 56361656 (+) True G61815
TU68587 lncRNA upstream 198112 56239908 ~ 56240568 (+) True G61802
TU68580 lncRNA upstream 207780 56230532 ~ 56230900 (+) True G61795
TU68560 lncRNA upstream 232132 56206299 ~ 56206548 (+) True G61775
TU68675 lncRNA downstream 789 56439774 ~ 56459034 (+) False G61858
TU68678 lncRNA downstream 18680 56457665 ~ 56459034 (+) True G61858
TU68692 lncRNA downstream 38292 56477277 ~ 56479352 (+) True G61869
TU68699 lncRNA downstream 42142 56481127 ~ 56481380 (+) True G61874
TU68708 lncRNA downstream 50600 56489585 ~ 56489800 (+) True G61883
XR_005052193.1 mRNA upstream 413767 55976159 ~ 56024913 (+) True LOC118964919
XM_021605689.2 mRNA upstream 608494 55815371 ~ 55830186 (+) True LOC110525514
XM_021605644.2 mRNA upstream 700263 55674086 ~ 55738417 (+) False LOC110525494
XM_021605663.2 mRNA upstream 700263 55674086 ~ 55738417 (+) True LOC110525494
XM_036989714.1 mRNA upstream 766836 55562420 ~ 55671844 (+) True LOC110532459
XM_021605703.2 mRNA downstream 112763 56551748 ~ 56596653 (+) False LOC110525521
XM_021605747.2 mRNA downstream 455267 56894252 ~ 56904226 (+) True eif3s6ip
XM_036980732.1 mRNA downstream 596623 57035608 ~ 57062851 (+) False vsir
XM_021605762.2 mRNA downstream 596632 57035617 ~ 57062851 (+) True vsir
XM_036989719.1 mRNA downstream 1183282 57622267 ~ 57765398 (+) True LOC110525562
TU68593 other upstream 186665 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 190910 56246584 ~ 56247770 (+) True G61804
TU68019 other upstream 408309 56019476 ~ 56030371 (+) True G61284
TU67933 other upstream 515304 55905508 ~ 55923376 (+) True G61202
TU66625 other upstream 1717217 54721188 ~ 54721463 (+) True G59963
TU70898 other downstream 1727580 58166565 ~ 58168178 (+) True G63958
TU70899 other downstream 1782537 58221522 ~ 58222852 (+) False G63959
TU70900 other downstream 1782537 58221522 ~ 58223130 (+) True G63959
TU71238 other downstream 2147873 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 2226349 58665334 ~ 58665906 (+) True G64315

Expression Profile