RNA id: TU68712


Basic Information

Item Value
RNA id TU68712
length 269
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G61887
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56493730 ~ 56493998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgcattatgctaattagtgtcagtcgatgattacgctcccggacccgggatggggagTTACTAGAGGTTAAACAAACTCCAATTTATGAATGCTTTACATAGCCTACATAAAGTCTTCATAAACATTACAGATGCTTCACAAATACTCTAGAAGATTATGCCATACTGTATAAAAGGTGATAGCAGCTCCTTATTTAAGGTGCATTGCCATGACATAACCCAATGTATAATTTCAGTAACACCTTACTTAAAGGAGGTATATATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68708 lncRNA upstream 3930 56489585 ~ 56489800 (+) True G61883
TU68699 lncRNA upstream 12350 56481127 ~ 56481380 (+) True G61874
TU68692 lncRNA upstream 14378 56477277 ~ 56479352 (+) True G61869
TU68675 lncRNA upstream 34696 56439774 ~ 56459034 (+) False G61858
TU68678 lncRNA upstream 34696 56457665 ~ 56459034 (+) True G61858
TU68714 lncRNA downstream 1932 56495930 ~ 56496482 (+) True G61889
TU68716 lncRNA downstream 3015 56497013 ~ 56497276 (+) True G61891
TU68718 lncRNA downstream 20520 56514518 ~ 56515150 (+) True G61892
TU68758 lncRNA downstream 57845 56551843 ~ 56572356 (+) True LOC110525521
TU68795 lncRNA downstream 105988 56599986 ~ 56600305 (+) True G61962
XR_005052193.1 mRNA upstream 468817 55976159 ~ 56024913 (+) True LOC118964919
XM_021605689.2 mRNA upstream 663544 55815371 ~ 55830186 (+) True LOC110525514
XM_021605644.2 mRNA upstream 755313 55674086 ~ 55738417 (+) False LOC110525494
XM_021605663.2 mRNA upstream 755313 55674086 ~ 55738417 (+) True LOC110525494
XM_036989714.1 mRNA upstream 821886 55562420 ~ 55671844 (+) True LOC110532459
XM_021605703.2 mRNA downstream 57750 56551748 ~ 56596653 (+) False LOC110525521
XM_021605747.2 mRNA downstream 400254 56894252 ~ 56904226 (+) True eif3s6ip
XM_036980732.1 mRNA downstream 541610 57035608 ~ 57062851 (+) False vsir
XM_021605762.2 mRNA downstream 541619 57035617 ~ 57062851 (+) True vsir
XM_036989719.1 mRNA downstream 1128269 57622267 ~ 57765398 (+) True LOC110525562
TU68593 other upstream 241715 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 245960 56246584 ~ 56247770 (+) True G61804
TU68019 other upstream 463359 56019476 ~ 56030371 (+) True G61284
TU67933 other upstream 570354 55905508 ~ 55923376 (+) True G61202
TU66625 other upstream 1772267 54721188 ~ 54721463 (+) True G59963
TU70898 other downstream 1672567 58166565 ~ 58168178 (+) True G63958
TU70899 other downstream 1727524 58221522 ~ 58222852 (+) False G63959
TU70900 other downstream 1727524 58221522 ~ 58223130 (+) True G63959
TU71238 other downstream 2092860 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 2171336 58665334 ~ 58665906 (+) True G64315

Expression Profile