RNA id: TCONS_00026629


Basic Information

Item Value
RNA id TCONS_00026629
length 1826
lncRNA type lincRNA
GC content 0.35
exon number 4
gene id XLOC_013514
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33042762 ~ 33047444 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAGATGACAACAAAAGTATGTTCTAATAAAATTGTATCCACATGACGGAAAACGTGTGAAGGACGTGACGTTTGTAACTCCTCCCTAAACTGCCCAGCTTGAGAAGTTTCTATTCTCCGCCATAACTTCGTCACGGTCTTTGATCGGACCTGCTTTCGGAGGAAACGTACGCTCCTGCTGGATATAAAGATGCAAACCAACGTTGTCAAAGTGAAGTTTAGAGAAATGAAGAAATATGTGTTTTCTTCAGATCCTTTCACATTTGAGACATTTTTGGAATGTGTTTCCAAGAAATTTGATCTTCCAACAATGGACATTAAAGTCTTTgatgacacaaagacagaagttgACGAGGAAGCATTTGAGCATCTGCTGACATGACCAGACATTGGAGTCCTAGAAATTGTCATCCCAGCAAGTCTGGATGATACTTTAAGCTCAAGCTCACTAGGAGAAACTGAGTGCACATCAGAGTCTGATGACACAGCAATGCTAAGCCCTCCacaaaaaaaacaagctaaaGACCGTCATCTTGGCCAAGTAGGAGTTACACATTTTGCCtctgatttaaatgtatttatatgatgATTAACAAGTGAAGATATTAAGCTAAAATATATACTTCTCAGTTGTTAATTTCTTGTATTTGCTCAAAATCACATTCGCCCTCAAGATGATTTCAGGATATTCTTAGGAACAGCCCTGGAGTAGAGAAAGTCATCAATGAATACTCTCGTACCAGAAGTCTGTCAGATTCACGAAGATGTGACATGGTCAAAATATTAGTTGCGCATTTGACAAATGAACATGGGTAAGTTTTTTATAAGGTAATTTATAAATAGATGTTTATGGTGTTTGTGTTATAAttggtttgtttatgtttgtgtgtagaACAAGACCTTCTCAACGTTTGAAGGAAGAATATGCAAAGGGAATCATCTCCCTATTCCCACTTTTAGCTGACCCCATGAGTAAGCGTGGTTATGTAAGTATTTGTTACTTGTCAGTCTTTTAAATTACAGGAGGAGTATATACCTTTTTATTACAAAGTAAACATGATCTATTTTTATAATGATCTATGTATAACTACTTGATCTGTGTATTGTTCTGGCTATAGGAGCATTATTACAATGCTGAAGATGGAAGTGGATACCTGGCTTGGAGAATCAAAACATTGCAGAAATACACATCTGGTGGGAGGTTGAAAAAGCCTCAAGAACCACAAACAGGTACTAGATCTAGAGCTACATGATTCATGGTTTTGTAGATTTTTCATTTTAGTTCAAAATATTTACCCCAGGTAAATATGACATAATACTATTTCCTTCAATCaaatttaaagaaatgtaatgAAAAACAACATAATGTGTACATAGGAGAGCAACACTGCAGCCATCAATctaactaaataaggcaggtgtgaaagcacctttaaactaagcattctaaagcgtattttacaagcaaggattcttacacAGCAACTGTCTTTACAAAAGACGAcagaagtttttaatttaaataaaaataatgtcagtattattagcctccttaagaaatatttacttaatatttttatatacacaaatcagttacaaaatcatttgactaattatttcaaCTTTAACTGATTAAGTCTAAATTCCACTTTAATCTGaacaaataactataaaatacttaaagggactttgtctgaatacaactgtcttgcaaaattcggtacccaaccctagttatAATATGTTGGCTGTTggttaaaatgtacaattttgcaTAGACTTGGGCTAGTGGACTTAAATATACTTAAATTACGATTGTGTTTGT

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000785 chromatin cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005634 nucleus cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043167 ion binding molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194312

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026976 lncRNA downstream 3438 33037834 ~ 33039857 (-) True XLOC_013513
TCONS_00027365 lncRNA downstream 143297 32896565 ~ 32899998 (-) True XLOC_013512
TCONS_00027364 lncRNA downstream 227941 32808945 ~ 32815354 (-) True XLOC_013511
TCONS_00027363 lncRNA downstream 228735 32805784 ~ 32814560 (-) False XLOC_013511
TCONS_00027362 lncRNA downstream 228814 32782613 ~ 32814481 (-) False XLOC_013511
TCONS_00026637 lncRNA upstream 666913 33714357 ~ 33723946 (-) False XLOC_013520
TCONS_00027366 lncRNA upstream 666913 33714357 ~ 33735250 (-) True XLOC_013520
TCONS_00027367 lncRNA upstream 735020 33782464 ~ 33796612 (-) True XLOC_013521
TCONS_00026978 lncRNA upstream 898898 33946342 ~ 33949859 (-) True XLOC_013522
TCONS_00027368 lncRNA upstream 1074752 34122196 ~ 34142630 (-) True XLOC_013524
TCONS_00026627 mRNA downstream 333967 32674236 ~ 32709328 (-) False XLOC_013510
TCONS_00026628 mRNA downstream 333998 32705465 ~ 32709297 (-) True XLOC_013510
TCONS_00026626 mRNA downstream 365540 32674212 ~ 32677755 (-) False XLOC_013510
TCONS_00026623 mRNA downstream 903401 32135370 ~ 32139894 (-) True XLOC_013506
TCONS_00026618 mRNA downstream 1073356 31965347 ~ 31969939 (-) True XLOC_013503
TCONS_00026630 mRNA upstream 27274 33074718 ~ 33080454 (-) True XLOC_013515
TCONS_00026631 mRNA upstream 33399 33080843 ~ 33085006 (-) True XLOC_013516
TCONS_00026633 mRNA upstream 43039 33090483 ~ 33093705 (-) True XLOC_013517
TCONS_00026634 mRNA upstream 201552 33248996 ~ 33254039 (-) False XLOC_013518
TCONS_00026635 mRNA upstream 202880 33250324 ~ 33252983 (-) True XLOC_013518
TCONS_00026625 other downstream 516191 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 2187760 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 3124190 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 3144934 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026594 other downstream 3735654 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026632 other upstream 42999 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026656 other upstream 2525737 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 3407863 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 4362379 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 6138730 39186174 ~ 39188401 (-) True XLOC_013560

Expression Profile

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