RNA id: TU69103



Basic Information


Item Value
RNA id TU69103
length 352
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G62236
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56645088 ~ 56645508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAATGGCGACACCATGTGGAAGCTGTATGCGTTTACAGGGGGTTCGCATATATTTTCTCTCGTCTTAAACAATTCATTGAATGGCGGAcgaatattttgtttttgtttttggtaaacagttttaccagggatttttactcctaaacacgttctgttatagccacagacccgatttaaccagttttagaaacttcagagtgttttctatccacacatacttatcatatgcatatactatattcctggcatgagtagcaggactttgaaatgttgcgcgatttttaacaaaaaACTACTTACTAGTGTGTTAATGTCTTGTGCTGTAACCTCTGATCCCTAAATGTATGCTGac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68922 lncRNA downstream 4158 56640708 ~ 56640930 (-) True G62064
TU68902 lncRNA downstream 23084 56621791 ~ 56622004 (-) True G62044
TU68900 lncRNA downstream 23603 56620770 ~ 56621485 (-) True G62042
TU68893 lncRNA downstream 36379 56608418 ~ 56608709 (-) True G62035
TU68892 lncRNA downstream 36806 56607387 ~ 56608282 (-) True G62034
TU69134 lncRNA upstream 37650 56683158 ~ 56702331 (-) True G62265
TU69184 lncRNA upstream 107710 56753218 ~ 56774399 (-) True G62314
TU69273 lncRNA upstream 237235 56882743 ~ 56882958 (-) True G62400
TU69277 lncRNA upstream 238701 56884209 ~ 56884429 (-) True G62404
TU69917 lncRNA upstream 262753 56908261 ~ 56908564 (-) True G63014
XM_021599100.2 mRNA downstream 100790 56535669 ~ 56544298 (-) True LOC110521481
XM_021605194.2 mRNA downstream 497684 55901898 ~ 56147404 (-) False LOC110525190
XM_021605723.2 mRNA upstream 146113 56791621 ~ 56873356 (-) False smoc2
XM_021605735.2 mRNA upstream 146113 56791621 ~ 56873356 (-) False smoc2
XM_021605716.2 mRNA upstream 146113 56791621 ~ 56873358 (-) False smoc2
XM_021605727.2 mRNA upstream 146113 56791621 ~ 56873359 (-) False smoc2
XM_036980719.1 mRNA upstream 148775 56794283 ~ 56873384 (-) True smoc2
TU68821 other downstream 111113 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 491170 56153430 ~ 56153918 (-) True G61715
TU68326 other downstream 811728 55832825 ~ 55833360 (-) False G61563
TU67309 other downstream 1441346 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 1451365 55193297 ~ 55193723 (-) True G60614
TU70000 other upstream 390159 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 406590 57052098 ~ 57062848 (-) False G63093
TU70239 other upstream 751686 57397194 ~ 57398488 (-) True G63328
TU72149 other upstream 2139234 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 2498865 59144373 ~ 59155145 (-) True LOC110525695

Expression Profile