RNA id: TU69134


Basic Information

Item Value
RNA id TU69134
length 640
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G62265
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56683158 ~ 56702331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcaccaaatggacatgatgaaatcaacacaacgagtgatggaaaggaacaactatcactgcacggccatcctgtgttcatcaggtcagtcaatTTTGCAattctgcagtatttttgagcatgtcaaatttcttTTGGCATTTGGCCAAAgaaaaagtgacttttgactttgacttttgacttcctatgaaatcatattgcaaatggacaaaacatatgtcTTGTGCACaaaaaaaaaaaaaaaataattaaaaggaatgataaagtcaaataaaagcatttatttttcttaatctatatattttccttggtacatatatatatacatacatacatacatacatacatacatacacacatatgtacgtacatacatacgcacatatacatacacacacacacacctacgcacacgtactcaaaaactaaattaaaataaaaacacacacaaaaaaaaaaaaaaacataacacttgcagcagcactatcaaggttcttatcagctatttcaagcattcgctgagacgacgggccaataattcgtttttaggttttacagtaccttacacaacatgtatctgcgcatttccctagtcaccccgttcactctgtccagtttgaaatatagttgaatagtggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69103 lncRNA downstream 37650 56645088 ~ 56645508 (-) True G62236
TU68922 lncRNA downstream 42228 56640708 ~ 56640930 (-) True G62064
TU68902 lncRNA downstream 61154 56621791 ~ 56622004 (-) True G62044
TU68900 lncRNA downstream 61673 56620770 ~ 56621485 (-) True G62042
TU68893 lncRNA downstream 74449 56608418 ~ 56608709 (-) True G62035
TU69184 lncRNA upstream 50887 56753218 ~ 56774399 (-) True G62314
TU69273 lncRNA upstream 180412 56882743 ~ 56882958 (-) True G62400
TU69277 lncRNA upstream 181878 56884209 ~ 56884429 (-) True G62404
TU69917 lncRNA upstream 205930 56908261 ~ 56908564 (-) True G63014
TU70009 lncRNA upstream 315933 57018264 ~ 57018486 (-) True G63102
XM_021599100.2 mRNA downstream 138860 56535669 ~ 56544298 (-) True LOC110521481
XM_021605194.2 mRNA downstream 535754 55901898 ~ 56147404 (-) False LOC110525190
XM_021605723.2 mRNA upstream 89290 56791621 ~ 56873356 (-) False smoc2
XM_021605735.2 mRNA upstream 89290 56791621 ~ 56873356 (-) False smoc2
XM_021605716.2 mRNA upstream 89290 56791621 ~ 56873358 (-) False smoc2
XM_021605727.2 mRNA upstream 89290 56791621 ~ 56873359 (-) False smoc2
XM_036980719.1 mRNA upstream 91952 56794283 ~ 56873384 (-) True smoc2
TU68821 other downstream 149183 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 529240 56153430 ~ 56153918 (-) True G61715
TU68326 other downstream 849798 55832825 ~ 55833360 (-) False G61563
TU67309 other downstream 1479416 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 1489435 55193297 ~ 55193723 (-) True G60614
TU70000 other upstream 333336 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 349767 57052098 ~ 57062848 (-) False G63093
TU70239 other upstream 694863 57397194 ~ 57398488 (-) True G63328
TU72149 other upstream 2082411 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 2442042 59144373 ~ 59155145 (-) True LOC110525695

Expression Profile