RNA id: TU69184


Basic Information

Item Value
RNA id TU69184
length 394
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G62314
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 56753218 ~ 56774399 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTACACATGCAATTTTTTTTGTCTATGAGGGGGAAGAACAGTTTTGCTACCGGTAAGGGAGCTACGACTCTGTAATGGAGAtattggattttcaactgctagggaagggctacaaactgtttgtggacaaccactgtgattattagtgtctgaccctgctggtcatctatgaacgtttgaaaatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacatctgcattgctgtttggggttttaggctgggtttctgtacagcactttgtgacatcagctgatgtaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69134 lncRNA downstream 50887 56683158 ~ 56702331 (-) True G62265
TU69103 lncRNA downstream 107710 56645088 ~ 56645508 (-) True G62236
TU68922 lncRNA downstream 112288 56640708 ~ 56640930 (-) True G62064
TU68902 lncRNA downstream 131214 56621791 ~ 56622004 (-) True G62044
TU68900 lncRNA downstream 131733 56620770 ~ 56621485 (-) True G62042
TU69273 lncRNA upstream 108344 56882743 ~ 56882958 (-) True G62400
TU69277 lncRNA upstream 109810 56884209 ~ 56884429 (-) True G62404
TU69917 lncRNA upstream 133862 56908261 ~ 56908564 (-) True G63014
TU70009 lncRNA upstream 243865 57018264 ~ 57018486 (-) True G63102
TU70011 lncRNA upstream 244770 57019169 ~ 57019430 (-) True G63104
XM_021599100.2 mRNA downstream 208920 56535669 ~ 56544298 (-) True LOC110521481
XM_021605194.2 mRNA downstream 605814 55901898 ~ 56147404 (-) False LOC110525190
XM_021605723.2 mRNA upstream 17222 56791621 ~ 56873356 (-) False smoc2
XM_021605735.2 mRNA upstream 17222 56791621 ~ 56873356 (-) False smoc2
XM_021605716.2 mRNA upstream 17222 56791621 ~ 56873358 (-) False smoc2
XM_021605727.2 mRNA upstream 17222 56791621 ~ 56873359 (-) False smoc2
XM_036980719.1 mRNA upstream 19884 56794283 ~ 56873384 (-) True smoc2
TU68821 other downstream 219243 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 599300 56153430 ~ 56153918 (-) True G61715
TU68326 other downstream 919858 55832825 ~ 55833360 (-) False G61563
TU67309 other downstream 1549476 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 1559495 55193297 ~ 55193723 (-) True G60614
TU70000 other upstream 261268 57035667 ~ 57062848 (-) False G63093
TU69997 other upstream 277699 57052098 ~ 57062848 (-) False G63093
TU70239 other upstream 622795 57397194 ~ 57398488 (-) True G63328
TU72149 other upstream 2010343 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 2369974 59144373 ~ 59155145 (-) True LOC110525695

Expression Profile