RNA id: TCONS_00026632


Basic Information

Item Value
RNA id TCONS_00026632
length 2654
RNA type nonsense_mediated_decay
GC content 0.39
exon number 3
gene id XLOC_013517
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33090443 ~ 33093741 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCTTCAGAGGTTTCTGCCTTGCATATATATTAGCATGGCAAAGAAGATTGTGTCACTGCCAGTACTGCTGCTGATAGTGTATGGCATAAGTGTTTCAGCTTTGGCACAAGTCTGCAGACTGCTGAGTCAGCCTGCACTCCCTCTACTTTCTGCAGAAAGAGACATCAACATTGGGGCAATATTCTCAATCCACATTAGTGCTCTGCTAAAGATGCATTCTTTTACTTTCAAGCCAGAGTCAACTGCATGCATCAGATCAGTCACTTTGCCACATGTGCCTGCTTGAGTAACAGAAAAAGGTATGCATCCTTCTTTAGAACGATCCCCAGTGACTATTACCAAAGCAGAGCACTGGCTCAGCTTGTTAAGCACTTTGGCTGGACCTGGGTTGGTACAGTCAGGAGTCGCAGTGATTATGGCAATAATGGCATTGCAACATTCGAGGAAGCAGCAAAAAAAGAGGGGATTTGTATTGAATACTCAGAGGCCATATTAAGAACTGATCCACAAGATCAATTTCTGAAGACAGTAGAAGTGATAAAGAAGGGCACTGCGAGGGTTGTGTTAGCTTTTGTTGCATTAAGAGATTTTTACCCACTTTTAAAAGAAATTGCGCAACAAAACATTACAGGGCTGCAGTGGGTTGGCAGTGAATCTTGGATAACATCCCGAACTGTAGCAGAAACAAAGGAATATAGTTTCCTTTCTGGAGCTGTGGGCTTTTCTATAGCAAATGTCAAACTTGTGGGCCTACTAGATTTTCTAGTGAATGTGCACCCTGATCATGAACcgaaaaataaacttttaaaagaaTTCTGGGAAACAACATTCCAGTGCTCTTTTAATAACAGAGGAAGCGTTGGGTGTACTGGCTCAGAGAAACTAGCAAACTTACAAAATGAATATACTGATGCCTCAGAGCTACGGATAGCCAATAAAGTGTACACAGCAGTGTATGCTGTTGCACATACACTACACAATATATTTCAAGACTTCAAATCAGCCAACAGGAGCAAATTAAAACAACCAACACCTCAAATGGTACTGAACTATATGAAAGATGTAAGATTCACTGTCAAAACAGGTGAAGAAATATTTTTTGATACAAGTGGTGATCCAGTGGCAAGATATGATCTTGTGAACTGGCAACCTTCTGGGGATGGAAGTCTGCAGTTTAAAAATGTGGGCATCTATGACAGTTCACTTCCTTCAGAGAAATGTCTTCAGGTTAATCAGGAACATGTGCTATGGGCAGATAACAGTAGACAGGTATTATTTTCTACTGTATCAAAATAAGGTAATGAGAAAATTCTCAAAACAATCAATTTggcatatttgttttaaaatatatgacatcaGAGAGTCAAAAAGCTTTTGAAAATACAACAGTATTTAGAAGTATATTACAGTcagtatattacatttaaatatttaatcataCTCCTATAGGCCTTTTATATGACAGCTTATTTTTTCATAGTTGCCTGTATCCGTGTGCAGTGAGAGCTGCCCCCTTGGAACTAGGAAGGCTGTGCAAAAAGGAAGACCGGTCTGCTGTTTTGATTGTATTCCATGTGCAGATGGAGAAATAAGTAACAACACTGGTAAAGCAGTTCATGCTGGTTAACTCTCAAAAAAGTACTTTGAATTAAAATTTATTGTCCAATCCTCACACTGTTCCTTTTCCCCCCTGACAGACTCTAGTGACTGCTCTCCTTGTGATGAGGAGTACTGGtcaaatgaaagaaaagaaaaatgtgtgTTAAAAGTGATCGAATTCCTCTCTTATACTGAAATCATGGGGATGGTGCTTTGTATATTCTCCTTTATTGGATTGTTATTAACAGCAATGGTATCTTTTTTGTTCTATCTTCACAAAGAAACACCTATTGTCAGAGCCAACAACTCAGAACTGAGCTTCCTGCTGCTCTTCTCACTCTCACTGTGTTTTCTTTGTTCACTCACTTTCATTGGTCGTCCCACTGAGTGGTCCTGTATGTTGCGTCACACAGCATTTGGGATCACTTTTGTCCTCTGTATTTCCTGTGTTCTGGGGAAAACAATAGTGGTGTTAATGGCCTTCAGGGCTACACTTCCGGGAAGTAATGTCATGAAATGGTTTGGGCCTACACAACAACGACtcagtgttgtttttttaacattaatacaGGTGATTATCTGTGTTGTTTGGTTAACTGTCTCTCCTCCATTCCCATATAAGAATTTGAGCTATTACAGAGAAAAGATCATCCTGGAATGTAATTTGGGTTCAGCTTTGGGATTTTGGGCCGTTCTGGGTTATACTGGCCTGCTATCtgtcttgtgttttattttagcttttcttGCTCGTAAACTCCCTGATAACTTCAATGAAGCCAAGTTCATCACATTTAGTATGCTCATATTTTGTGCTGTTTGGCTCACATTCATTCCAGCTTATGTCAGCTCTCCTGGAAAATTCACAGTAGCAGTGGAGATATTTGCTATCTTATCTTCAAGTTTTGGTTTACTATTTTGCATATTTGCTCCGAAATGTTACATAATTTTACTCAaaccagaaaaaaacacaaagaaacaaaTGATGGGAAAGTCGTCttctaaaactatttaaaatcatACAAGTAAACAACATTTTCTGTCTTGTGGTTAGCA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050712-4 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in olfactory epithelium and olfactory rosette.

Ensembl:

ensembl_id ENSDART00000151432

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026629 lncRNA downstream 42999 33043295 ~ 33047444 (-) True XLOC_013514
TCONS_00026977 lncRNA downstream 46167 33042762 ~ 33044276 (-) False XLOC_013514
TCONS_00026976 lncRNA downstream 50586 33037834 ~ 33039857 (-) True XLOC_013513
TCONS_00027365 lncRNA downstream 190445 32896565 ~ 32899998 (-) True XLOC_013512
TCONS_00027364 lncRNA downstream 275089 32808945 ~ 32815354 (-) True XLOC_013511
TCONS_00026637 lncRNA upstream 620616 33714357 ~ 33723946 (-) False XLOC_013520
TCONS_00027366 lncRNA upstream 620616 33714357 ~ 33735250 (-) True XLOC_013520
TCONS_00027367 lncRNA upstream 688723 33782464 ~ 33796612 (-) True XLOC_013521
TCONS_00026978 lncRNA upstream 852601 33946342 ~ 33949859 (-) True XLOC_013522
TCONS_00027368 lncRNA upstream 1028455 34122196 ~ 34142630 (-) True XLOC_013524
TCONS_00026631 mRNA downstream 5437 33080843 ~ 33085006 (-) True XLOC_013516
TCONS_00026630 mRNA downstream 9989 33074718 ~ 33080454 (-) True XLOC_013515
TCONS_00026627 mRNA downstream 381115 32674236 ~ 32709328 (-) False XLOC_013510
TCONS_00026628 mRNA downstream 381146 32705465 ~ 32709297 (-) True XLOC_013510
TCONS_00026626 mRNA downstream 412688 32674212 ~ 32677755 (-) False XLOC_013510
TCONS_00026634 mRNA upstream 155255 33248996 ~ 33254039 (-) False XLOC_013518
TCONS_00026635 mRNA upstream 156583 33250324 ~ 33252983 (-) True XLOC_013518
TCONS_00026636 mRNA upstream 239670 33333411 ~ 33337703 (-) True XLOC_013519
TCONS_00026638 mRNA upstream 876644 33970385 ~ 33979693 (-) False XLOC_013523
TCONS_00026639 mRNA upstream 879090 33972831 ~ 33979422 (-) False XLOC_013523
TCONS_00026625 other downstream 563339 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 2234908 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 3171338 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 3192082 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026594 other downstream 3782802 29307525 ~ 29307641 (-) True XLOC_013484
TCONS_00026656 other upstream 2479440 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 3361566 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 4316082 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 6092433 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 6492805 39586546 ~ 39586665 (-) True XLOC_013565

Expression Profile

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