RNA id: TU69997


Basic Information

Item Value
RNA id TU69997
length 5549
RNA type TUCP
GC content 0.44
exon number 2
gene id G63093
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57035667 ~ 57062848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTAAGAGCGCCGATTTATTATAGAAAAAAATTACATCAGcattttatttcattatttttggGAAAGGCTTTATTTCATATGGTGTTGCCAAAGCTGCTGCTGTTTGgctattacacacacacgcacacacacacacacacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacactactaattTCAGGGTGGTTTTTTTTACAATTCACTGAACACCCCTTATCTAATATCTACAGTAGTATTCGATTATGTATACTTACAGATAGATAAACATAAAGATAACAAATAATCAAGTATAAGCACAAAATATGCCAAAGGATATCACAAAACAGTAAACACAAGAACACCATGGAATAAACACGTTGGTCATCTTGGCAGTGAAGGCATTTGGCTCGTTGAGTTTGGGTTACTAGATCCATCCACTAGCCAAAATTGACACTTCTCTTCAAAAACAGACCATCCAGCATAGCAATATATCTCTAATATTTATTTGACAGTTTCTAGTACTGGTTGAATATTTGGACATTGTTACGTGCAGAGAAGGGTGTGGGAAGGAATAAGAGCGAGGAAAgggaagggatggaggggggtTACAGAAACACAGTATTTTAGGTAGTGAAATATATAAAAGGGGAAAGAGGAACAACACAAGAATGGGACGTTTAGAtaaataaaagtggggctttggTCTCGTTACAACAGCTCAGTGAAACACATTTTTAGAAACAATTGTTTAAGGCTGGTTGGAAATGGCCTTAAAAGACTACTGTCAGCACATGGGTACCTCTTACTACCCTGATCACTTTGGCACAAGCAAATGTGCTGAATATGCATATCAGAGCCATAGGAAGAGGGAATCATCATAGAAAGAAGTAGAACACTATGGGCCAGTTTCCAGGACACAGATAAAGCTAATGGTGTTGGACTAAGaagcactttcaatggagaatctccatttaATTGTGTCCCTCTTTTTTAGATTTAGTCTAGTCTTAGTAATTTTGACAAAAATATTACGTcttagtaaaacatttttttaataatgatTTAATCTAGTTATTGTCAAAATGAAGAAAACAATGGGCCATTTTAGTCAACTAAATGCTCTTTCATTTTATTCACATAATTCATATTGCAtagatatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagtcccaGTGCTCGAGTCACTGGGTGCACATTAACTCTATTTACCGAGTCAGATATAGGTGTAGTGGCAAGAAGAATTTAGTCAATCAATTTTTTGCAATCCCTTTCTTCTTTTCTTTCTGTGCCACCGAATGTTTGCATATACAGTGGGCTACTGGTAATACCAGAGCCACGTTCAGTAGAAAAATgtcagaggcatgtttgttctacatagcatatttctatctgaacattccAAAAAGTTTCATACTGCTGAACGAGCCCCAGTTtgttagctatagctagctattgaggtaacatgactgaacaaggtGTAGTCTAAACAAATGGTTAACGGTCTGGTCCGCAAGTAGCCTACTTTTAGCACGGCCCACAATATTCTTTATGAATATAAAATGCAACCCGCCAATGCACAATAAAAAGAAACAACATAGAGCTGGGTCATATCTTTTGAACAGTAAGGGCTAGCATCAAGCGTTTTGtctgaggaaaagagggagacttGGCTACAGAACCTGCCTATGAAAGGCAGTGGGGAAGGTGGGAGGGTTGCGCGAAGACTACAAATTCAAAAAACAGCTTACTTTTCTCTACTCAAGGAAGAGAAGAACATCGCTAGACTGTAGTTGCACTGTTCAACTCAATGCTGCTATTGTTTTACATTTTGTAAAGCAGCTTGTGTTTCTTAACCAGGCAAAGGGTAGCTGACTAGAATGCTAGTGGTGACTGGTTAGCTACGGGAAATTAAGAAGAGTTGCCTGCGCAATGTCGGGAAATTAAGAAGAGTTGCCTGCGCAATGTGTCTAATCGAAGACGGAGCTGGAGCGAAGCCTGTCCACACTCATCGCTTGCTCCCCCCCAGCTCACCAGCTGATGGAGGTTGTGTGTGCCGGGTGTGGTGCATCCTTCCCACTGCTGAAAATAACTACATCTGTCCTGCTAATATTAATTGTGCTTATCACTGAAAAGTGCTAGATTTGTTCAAAAACGTTCAAAAACGATTGTCCTGTCCACTAAAGAGTCTACGATTGTCCTGTCCACTACAGAGATAGGTAGATGTTGTCGTGTCTCATTTTAGTCAACTGTATTGAAAAATCACTTTCGTTCAGTTCGTTTTTTCTAGGTCTGTCTAGTCAGTCTCGTcaattgccactgaaaaataGGTTTGTCAAATATTAGTGGAAAACAAATGTCTAAACCAAAGTTTACACTGTTTTCTGTCTAGATTGatgcttaatctgtgtccggggaACGGGCCCTATATGGGGGAAAATGGTGAGGGAAATGGTGAGGAGCATATCATCAAGAGTCCACAGGAGTTGCTTTGTATCCTCTACCGCCCACCCTGCACCCACACTCCCCCCATCCTCCTCAGTACAGTCCTGGGACATCAGATCAGGAGCACCTGCTGGTCCTTGAGCTGTCGTCAGTGGTCAGACGGTGCGTCACATACTTAGCGGGCCCCCACTGCAACACAAGTGTCGAgaacaaatcccccccccccctctttggcCTCCTCCAGTTGTTGTTGCAGGTGGAACATTTATTTTAGAAGAAActgtcccctccttccctctcccatcCATCCAGGATgcggtacacagagagagagagctcccccAGCAGAGAAGGTTGTGAGACAGGCTTCAGGGTGACATGGCAGAGTGACGATGAATAACTAACCACAAGGTGTTTCTGGGTTAGGGAGCCATTGACTGCTTCTCTCTACACATGCAGGAAATCAGGAGACTCTAGGATGGGATCTGTTCTGGGAAGAAGACAACTCCGTGTGCGGGAGGAGATAGGGGGGTGCCAGGGTCGGACAGTAGCAGGTGTCGGCCTGTCTCTGAGGACTGCCTGGTCATGATTTGAGACACAGTCCTGGTCTTAGCCTGGCCTGGGGGTGAGACCCCCAGAAATACTGGGTTCTCATGGCCCGCAGCTTCactgaggagagacacacacaggggagagggAAGAAACTACCAGATAGATGTATACagaaaacatatacagtattgtATAGTACACAACTGCTATCcgatacatacagtattatattaaGTGTAAACTCCCTCTGTGCAGTGCACTTCATCAGTCCCAATTCAAGTACATTATTTTTACATTCCTCCAGTTGTATGAGTCGGTGAGTGCACATTTACAAGTTCTCAAGACATTGCATACTTATATCAAGAGTTGACTATACAtgaatacacacatactgtacataacagTGTGATTACCACTTTGTATCTGTGTTATCAACAGCGTTATGGAAGTATGTATGTGGTTAGTTTTAGCCTAATGTCAGAGGGAAGCCATAGCTGTCGTCTGGGCTGTGCAAAACTCAACTCACCTGTCCATTCTCACCAGCTCGTGTGCACCTGGGAGGGGGAAAGGGAAATGGCCCATTATCAGACAACAAAGCAGTGTGCTAAATCTATGCATGTTTATTCCCTAATGTCATACTTGCTAGTGTAGAGGAAATGAgtttaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgttgcacGCGTGCATGTATGTCTTTGTTACTCACGTTGGCTGGACTGGGCGGATTGTCTTTGCTTGTACACTAACACCATGATGATGGGCAAAGAGAGAATAGCCATGATGCAAGCAGCTGTGGCCAGGCCTGCAGTCACTGACCCTGAGGATACTGTAAATAGACCAGGGGCAAAATTAACCTCAAAGAGCATTTTACTTAGCctgatggaaccagcctgatcgccGTGTCCACCATTCTATTTCCATTCTATGTCAGTCTAAACTTCTTCCTCATTGAAACAGTTTGAGCCTGTAATGAGGGGCATTATTTAAAACTAACTGATCTGTGGTTGGATCTCTTTCAACCAACCAGAGGACAGCCTAATTCAACGCACATGTCGGATTTTGTCCTAAACCCACCCATTGTTTCTGAGAGGATGCTGATTGGCCCCTTTATACCAAACACCCATCtttagtccgcaaaaacactacagtgaatactacagtaaagtcagcAGAAACATTACAGTGACaactatagtatttataccaactcattggccttgtggttagagtgtctgCGCTGAGAATGGAAGGTTGTGAGTCCAATCCCTGGCCGAGTCATACCAAATACTATAAAAATAGGATCTGATGcatctctgcttggcactcagcgTTAAGGAAATGGATTGGGGGCAAGGCCATACAATacactagcgtcctgtccagtgGGTGTACTTGtccatcaagctgcctcacgctacagaaacagtaGATGGGCTCCTGCCTTTTGAGCCATTCCGTCCTGCACAAGTTACTTAATTACTTATTTACACACTATATAGCATTTTTTTGTATAGGCAggtgactccaataatcaactaatcatgaccttaggtttagaatgcaattagtttaatcagctttgcttgctagggatggggaaaaagtgtgacaccactcCGGCGcccaaggactggagttgcccatccctgtgcTGGAGGCAGGTACAATTGTCCATGTGAATAAAGTATACCTTCTGCTGGCTTGATGTCCAATAGAGTGCATTTCGCCTCATCTCTTTTccctacagagagatgaggagacaTACAAGacagtttagcattttaaatGTCATGATAAGAATTGACTCGTAGTTGcaccgtgcacacacacacacaaatattaaaCAATTGACAGACGTgaattcaaacacacacaaaaactcaAAACACACATTTtcgctctcactctttctctctctctctctcacacgcacgcacgcacgcacgcacgcacgcacgcacacacacacacacacacacacacacacacacacacacacacacagtgacacacacacacacatggccttACGAGGTGTGATAGTGAGAAAGATGTGGCTATGCGTCCTCTGCACCACCTTGCCATTGTTAATATCCAGGGAGAGGCAGCAGTAACGCCCTTGGTCAGAATTGTTCACAAGCTGTAGTTGCACCCAGAAAGACTCTTCGCTTGCCCCGTACTTTACCCCCCAAGGAAGCGCCGCACTGGAATGGTTGCCCCGGTGATTGTGTTCGCGGGGGTGCACCTTGTCATGGCAATGCTCAGCTGAGTGGGGGGTGAAAAGCCAGCTTTGATGCAGGTGGTCCGAGGGGTGCAGCTTGGCACCTTTCTGGGCACAGAGCAGGGTGACATTGGCACCCACCTCGCACATGTAGGAAAGGTGGGGGGCATTGACAGTCAGGCGGGTGTGAGGATGGGCCACGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70017 lncRNA downstream 17674 57027733 ~ 57034424 (-) False G63110
TU70018 lncRNA downstream 17674 57027733 ~ 57034424 (-) True G63110
TU70015 lncRNA downstream 26102 57025691 ~ 57025996 (-) True G63108
TU70011 lncRNA downstream 32668 57019169 ~ 57019430 (-) True G63104
TU70009 lncRNA downstream 33612 57018264 ~ 57018486 (-) True G63102
TU70077 lncRNA upstream 74742 57137590 ~ 57137801 (-) True G63168
TU70111 lncRNA upstream 137285 57200133 ~ 57200464 (-) True G63202
TU70115 lncRNA upstream 148981 57211829 ~ 57212061 (-) True G63206
TU70117 lncRNA upstream 150822 57213670 ~ 57213899 (-) True G63208
TU70122 lncRNA upstream 157669 57220517 ~ 57220798 (-) True G63213
XM_036980719.1 mRNA downstream 178714 56794283 ~ 56873384 (-) True smoc2
XM_021605727.2 mRNA downstream 178739 56791621 ~ 56873359 (-) False smoc2
XM_021605716.2 mRNA downstream 178740 56791621 ~ 56873358 (-) False smoc2
XM_021605723.2 mRNA downstream 178742 56791621 ~ 56873356 (-) False smoc2
XM_021605811.2 mRNA upstream 1106642 58169490 ~ 58282803 (-) False LOC110525582
XM_021605820.2 mRNA upstream 1106642 58169490 ~ 58282803 (-) False LOC110525582
XM_021605857.2 mRNA upstream 1106642 58169490 ~ 58282803 (-) False LOC110525582
XM_021605866.2 mRNA upstream 1106642 58169490 ~ 58282803 (-) False LOC110525582
XM_021605840.2 mRNA upstream 1106642 58169490 ~ 58282804 (-) False LOC110525582
TU68821 other downstream 518123 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 898180 56153430 ~ 56153918 (-) True G61715
TU68326 other downstream 1218738 55832825 ~ 55833360 (-) False G61563
TU67309 other downstream 1848356 55203417 ~ 55203742 (-) True G60624
TU67299 other downstream 1858375 55193297 ~ 55193723 (-) True G60614
TU70239 other upstream 334346 57397194 ~ 57398488 (-) True G63328
TU72149 other upstream 1721894 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 2081525 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 3367359 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 4619430 61682278 ~ 61686308 (-) True G68736

Expression Profile