RNA id: TU69402


Basic Information

Item Value
RNA id TU69402
length 228
lncRNA type intronic
GC content 0.55
exon number 1
gene id G62524
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57076668 ~ 57076895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaacttgtcaataatcaactgactggctttcttgatgtctacagtattctctctggtatgtaatctggtttccgctcaggttatggatgtctCACTGCaacctcaatgatgtcaccattgcccttgattctaagcaatgttgtgctgctatttttattgacttggccaaggcttttgatatggtagaccattccattcttatgggccggctaaggagtattggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69398 lncRNA upstream 8614 57067840 ~ 57068054 (+) True G62520
TU69381 lncRNA upstream 56916 57019442 ~ 57019752 (+) True G62504
TU69378 lncRNA upstream 59803 57016367 ~ 57016865 (+) True G62501
TU69323 lncRNA upstream 63936 56960399 ~ 57012732 (+) True G62447
TU69288 lncRNA upstream 164851 56911606 ~ 56911817 (+) True G62415
TU69453 lncRNA downstream 59944 57136839 ~ 57137089 (+) True G62565
TU69454 lncRNA downstream 61102 57137997 ~ 57138199 (+) True G62566
TU69459 lncRNA downstream 70461 57147356 ~ 57147649 (+) True G62571
TU69468 lncRNA downstream 81646 57158541 ~ 57158781 (+) True G62580
TU69479 lncRNA downstream 96998 57173893 ~ 57174101 (+) True G62591
XM_036980732.1 mRNA upstream 13817 57035608 ~ 57062851 (+) False vsir
XM_021605762.2 mRNA upstream 13817 57035617 ~ 57062851 (+) True vsir
XM_021605747.2 mRNA upstream 172442 56894252 ~ 56904226 (+) True eif3s6ip
XM_021605703.2 mRNA upstream 480015 56551748 ~ 56596653 (+) False LOC110525521
XR_005052193.1 mRNA upstream 1051755 55976159 ~ 56024913 (+) True LOC118964919
XM_036989719.1 mRNA downstream 545372 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA downstream 617603 57694498 ~ 57722025 (+) True LOC118964920
XM_021605791.2 mRNA downstream 729239 57806134 ~ 57937988 (+) False wdr11
XR_005052202.1 mRNA downstream 884821 57961716 ~ 57963823 (+) True LOC110525578
XM_036980882.1 mRNA downstream 1731475 58808370 ~ 58838199 (+) False fam160b1
TU68593 other upstream 824653 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 828898 56246584 ~ 56247770 (+) True G61804
TU68019 other upstream 1046297 56019476 ~ 56030371 (+) True G61284
TU67933 other upstream 1153292 55905508 ~ 55923376 (+) True G61202
TU66625 other upstream 2355205 54721188 ~ 54721463 (+) True G59963
TU70898 other downstream 1089670 58166565 ~ 58168178 (+) True G63958
TU70899 other downstream 1144627 58221522 ~ 58222852 (+) False G63959
TU70900 other downstream 1144627 58221522 ~ 58223130 (+) True G63959
TU71238 other downstream 1509963 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 1588439 58665334 ~ 58665906 (+) True G64315

Expression Profile