RNA id: TU69468


Basic Information

Item Value
RNA id TU69468
length 241
lncRNA type intronic
GC content 0.55
exon number 1
gene id G62580
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57158541 ~ 57158781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaaaacaataaacgtggaaaaaccAAAACACAGAgtacaaaacacagagacaggaacaatcacccacaaacacagtgaaacccaggctacctaaatatggttccgaatcagagacaatgactaacacctgcctctgattgagaaccatatcaggccaaacatagaactagacaaactagacatgtaacatagaatgcccactcagatcacaccctgaccaaccaaaacatagaaacatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69459 lncRNA upstream 10892 57147356 ~ 57147649 (+) True G62571
TU69454 lncRNA upstream 20342 57137997 ~ 57138199 (+) True G62566
TU69453 lncRNA upstream 21452 57136839 ~ 57137089 (+) True G62565
TU69402 lncRNA upstream 81646 57076668 ~ 57076895 (+) True G62524
TU69398 lncRNA upstream 90487 57067840 ~ 57068054 (+) True G62520
TU69479 lncRNA downstream 15112 57173893 ~ 57174101 (+) True G62591
TU69480 lncRNA downstream 16428 57175209 ~ 57175497 (+) True G62592
TU69484 lncRNA downstream 19616 57178397 ~ 57178807 (+) True G62596
TU69494 lncRNA downstream 41767 57200548 ~ 57200767 (+) True G62606
TU69496 lncRNA downstream 45685 57204466 ~ 57205061 (+) True G62608
XM_036980732.1 mRNA upstream 95690 57035608 ~ 57062851 (+) False vsir
XM_021605762.2 mRNA upstream 95690 57035617 ~ 57062851 (+) True vsir
XM_021605747.2 mRNA upstream 254315 56894252 ~ 56904226 (+) True eif3s6ip
XM_021605703.2 mRNA upstream 561888 56551748 ~ 56596653 (+) False LOC110525521
XR_005052193.1 mRNA upstream 1133628 55976159 ~ 56024913 (+) True LOC118964919
XM_036989719.1 mRNA downstream 463486 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA downstream 535717 57694498 ~ 57722025 (+) True LOC118964920
XM_021605791.2 mRNA downstream 647353 57806134 ~ 57937988 (+) False wdr11
XR_005052202.1 mRNA downstream 802935 57961716 ~ 57963823 (+) True LOC110525578
XM_036980882.1 mRNA downstream 1649589 58808370 ~ 58838199 (+) False fam160b1
TU68593 other upstream 906526 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 910771 56246584 ~ 56247770 (+) True G61804
TU68019 other upstream 1128170 56019476 ~ 56030371 (+) True G61284
TU67933 other upstream 1235165 55905508 ~ 55923376 (+) True G61202
TU66625 other upstream 2437078 54721188 ~ 54721463 (+) True G59963
TU70898 other downstream 1007784 58166565 ~ 58168178 (+) True G63958
TU70899 other downstream 1062741 58221522 ~ 58222852 (+) False G63959
TU70900 other downstream 1062741 58221522 ~ 58223130 (+) True G63959
TU71238 other downstream 1428077 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 1506553 58665334 ~ 58665906 (+) True G64315

Expression Profile