RNA id: TCONS_00026635


Basic Information

Item Value
RNA id TCONS_00026635
length 2064
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_013518
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33248996 ~ 33254039 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtGAGCTATTTTGCATCCTGCTCTTGTCTCAGTAACAAAAGGGAGTTTCCAGCATTCATGCGGACCATGCCAAGTGACCTATTTCAGATTAAGGCTTTGGTAAaacttattaattattttcaatggACATGGGTTGGACTGATAGGTGTGAATTCTGACTATGCTCACTTTGCTATCCAGCTCTTCCTTAAAGAATCAGAACAATTTAATATTTGTCCTGCTTATGTTCACTTTTATCCTGTTGTACTGATGGAAGATGCATTGGAGGAACTTGTGAACATTTTAAAAGCCTCTTCTGCCACAGTCATAATAAATTTTTCTGGAGAATCAGAACTGCATAGTATTCTAAAAGAATGCAGACGTCAAAATGTCACACATCTGCAGTGGATCGCCAGTGAGGCTTGGGCCACATCAAAATCCCTCTGGGAGGAATTTGGTGATCTGCTAAAGGGTACATTGGGTTTTGCCATACATAGAGCTGATATTCCACATCTTGGCAGTTATCTTAAAGAAATAAGACCTCAGACCTCCCATTTCCTCTCTGAGTTTTGGGAAGAGACTTTTCGTTGTCGACTGAATGGTTCCTTAAACACTCATGCACATGGAGAACAGGCACAAAACTGGCCAGCCTGTAATGGTAGTGAAAATCTGGATAATGTGTACACCACTTATTCAGACGTGTCACAACTCAGAGTCTCCTACAATGTTTACAAAGCTGTGTATCTCATAGCACATGCACTGCATGACATGAGCACATGTGTTCCAGGAAAGGGCCCGTTCCAGAATGGGACATGTGGGAGTCTGTATCAAATTCAGCCATGGCAGCTCCTGTACTACATGAAACAAGCAAATTTTACAATCTTAGGAGAAGAGGTCAGATTTGATGAGAATGGTGATCCTATTGCATCTTATGACCTTATGAACTGGCAAAGAGGATCCGATAGCTCCCTTCAACTTGTCAGGGTGGGATTCTATGATGCTTCCCTTGAAGATGACAAGGACCTAGTGGTAGAGGAGTCAGTAATTATGTGGCACAGAGCAGAGAAGGCACCAAAATCAATGTGTAGTCAAAGTTGTCTGCCGGGCACCAGAAAGGCCAGGCAAAAAGGAAAGCCAGTCTGCTGCTTTGACTGTATATCATGTGCTGAAGGAGAGATCAGTAATCAGACAGacTCAATTGATTGCTTGACATGCTCAAAAGAAACGTGGCCTAACCAAGCCCAAGACCGGTGCATCCCCAAAACTTTAGAGTTTTTGTCCTTTCAGGAGCCCTTGGGAATAATTCTTTGGGTATTTTCAGCATTCGGGGCCTGTGCAGCATTAGCAGTGCTCTGTGTGTTTGTAATGTATAGGAAGACTCCAGTTGTACGTGGAAACAATATAGAGTTAAGTTTCCTTCTCCTCTTGTTCCTCTGTGCTTGTTTTTTGATTGGCCTAACATTTTTAGGGAAGCCAACTGATTGGCTATGCCAAATTCGCTATCCAGCTTTTGGAATCAGCTTTACACTCTGTATTTCATGCATCTTGGCAAAAACTGTGGTCGTTTTAATGGCTTTCAGGGCCACCATCCCTGGCAATAATGTCATGAAGTGGTTTGGTCCTGTTAAACAAAGATCAAGTGTTATCCTGTGCACATGTGTGCAAGCACTTATTTGCATAATATGGTTAACAACTAAGCCCCCTCTTGCTTCATATAACAGCAAGTTCATGAGTGAAACTATAATTGTTGAATGTTCTGTGGGATCTGAAATTGGATTTTGGTGTGTGCTGGGATACGTTGGCCTTCTTGCTTGCTTGTGTTTTTTAATGGCATTTTTGGCTAGAAAGTTACCAGACAACTTTAATGAGGCTAAATTCATCACATTCAGCATGCTCATATTTTTTGCTGTGTGGGTAACCTTCATTCCAGTCTACGTGAGCTCAAGTGGAAAGTATATGGTTGCCGTCCATGTCTTTGCTATTCTAGCTTCTGCCTTTGGTCTTTTAATGTGTATATTTGCTCCTAAATGTTATGTTGTATTACTGAAACCAGAGAGAAATGACAAAAAACACATgatgaaaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-129 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000137856

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026629 lncRNA downstream 202880 33043295 ~ 33047444 (-) True XLOC_013514
TCONS_00026977 lncRNA downstream 206048 33042762 ~ 33044276 (-) False XLOC_013514
TCONS_00026976 lncRNA downstream 210467 33037834 ~ 33039857 (-) True XLOC_013513
TCONS_00027365 lncRNA downstream 350326 32896565 ~ 32899998 (-) True XLOC_013512
TCONS_00027364 lncRNA downstream 434970 32808945 ~ 32815354 (-) True XLOC_013511
TCONS_00026637 lncRNA upstream 461374 33714357 ~ 33723946 (-) False XLOC_013520
TCONS_00027366 lncRNA upstream 461374 33714357 ~ 33735250 (-) True XLOC_013520
TCONS_00027367 lncRNA upstream 529481 33782464 ~ 33796612 (-) True XLOC_013521
TCONS_00026978 lncRNA upstream 693359 33946342 ~ 33949859 (-) True XLOC_013522
TCONS_00027368 lncRNA upstream 869213 34122196 ~ 34142630 (-) True XLOC_013524
TCONS_00026633 mRNA downstream 156619 33090483 ~ 33093705 (-) True XLOC_013517
TCONS_00026631 mRNA downstream 165318 33080843 ~ 33085006 (-) True XLOC_013516
TCONS_00026630 mRNA downstream 169870 33074718 ~ 33080454 (-) True XLOC_013515
TCONS_00026627 mRNA downstream 540996 32674236 ~ 32709328 (-) False XLOC_013510
TCONS_00026636 mRNA upstream 80428 33333411 ~ 33337703 (-) True XLOC_013519
TCONS_00026638 mRNA upstream 717402 33970385 ~ 33979693 (-) False XLOC_013523
TCONS_00026639 mRNA upstream 719848 33972831 ~ 33979422 (-) False XLOC_013523
TCONS_00026640 mRNA upstream 719848 33972831 ~ 33979435 (-) True XLOC_013523
TCONS_00026641 mRNA upstream 728491 33981474 ~ 34143189 (-) False XLOC_013524
TCONS_00026632 other downstream 156583 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 723220 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 2394789 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 3331219 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 3351963 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026656 other upstream 2320198 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 3202324 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 4156840 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 5933191 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 6333563 39586546 ~ 39586665 (-) True XLOC_013565

Expression Profile

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