RNA id: TU69529


Basic Information

Item Value
RNA id TU69529
length 203
lncRNA type intronic
GC content 0.34
exon number 1
gene id G62641
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57261798 ~ 57262000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATAATCttttaaattatatcataaatcgGACTGATGgtgttatgtcacacatgcagctaacaaaaatatatggaaatgtctgctctgtCTAAAATTACAAccaaaaatggaagaggaaaaaggaagggggagaaagtgaGGAACTTGTCTGTCACCCCTGCATTAAAGACTAAAATTGGCTAAAGAAAATTGTAATAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69523 lncRNA upstream 6941 57254577 ~ 57254857 (+) True G62635
TU69520 lncRNA upstream 12000 57249587 ~ 57249798 (+) True G62632
TU69516 lncRNA upstream 17234 57244316 ~ 57244564 (+) True G62628
TU69513 lncRNA upstream 19899 57241548 ~ 57241899 (+) True G62625
TU69502 lncRNA upstream 37014 57224149 ~ 57224784 (+) True G62614
TU69533 lncRNA downstream 5612 57267612 ~ 57267930 (+) True G62645
TU69543 lncRNA downstream 21780 57283780 ~ 57284083 (+) True G62655
TU69620 lncRNA downstream 124020 57386020 ~ 57386235 (+) True G62732
TU69623 lncRNA downstream 130050 57392050 ~ 57392290 (+) True G62735
TU69631 lncRNA downstream 143364 57405364 ~ 57405597 (+) True G62743
XM_036980732.1 mRNA upstream 198947 57035608 ~ 57062851 (+) False vsir
XM_021605762.2 mRNA upstream 198947 57035617 ~ 57062851 (+) True vsir
XM_021605747.2 mRNA upstream 357572 56894252 ~ 56904226 (+) True eif3s6ip
XM_021605703.2 mRNA upstream 665145 56551748 ~ 56596653 (+) False LOC110525521
XR_005052193.1 mRNA upstream 1236885 55976159 ~ 56024913 (+) True LOC118964919
XM_036989719.1 mRNA downstream 360267 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA downstream 432498 57694498 ~ 57722025 (+) True LOC118964920
XM_021605791.2 mRNA downstream 544134 57806134 ~ 57937988 (+) False wdr11
XR_005052202.1 mRNA downstream 699716 57961716 ~ 57963823 (+) True LOC110525578
XM_036980882.1 mRNA downstream 1546370 58808370 ~ 58838199 (+) False fam160b1
TU68593 other upstream 1009783 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 1014028 56246584 ~ 56247770 (+) True G61804
TU68019 other upstream 1231427 56019476 ~ 56030371 (+) True G61284
TU67933 other upstream 1338422 55905508 ~ 55923376 (+) True G61202
TU66625 other upstream 2540335 54721188 ~ 54721463 (+) True G59963
TU70898 other downstream 904565 58166565 ~ 58168178 (+) True G63958
TU70899 other downstream 959522 58221522 ~ 58222852 (+) False G63959
TU70900 other downstream 959522 58221522 ~ 58223130 (+) True G63959
TU71238 other downstream 1324858 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 1403334 58665334 ~ 58665906 (+) True G64315

Expression Profile