RNA id: TU69543


Basic Information

Item Value
RNA id TU69543
length 304
lncRNA type intronic
GC content 0.35
exon number 1
gene id G62655
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57283780 ~ 57284083 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatttaaccaggtaggcaagttgagaacaagttctcatttgcaactgcgacctggccaagataaggcatagcagtgtgaacagacaacacatagttacacatggagtaaacaattaacaagtcaataacacagtagaaaaaaggggagtctatatatacattgtgtgcaaaaggcatgagaaggtaggcaaataattacaattatgcagattaacactggagtgataaatgatcagatggttatgtacaggtagagatattggtgtgcaaaagagcagaaaaataaataaataaaaacagtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69533 lncRNA upstream 15850 57267612 ~ 57267930 (+) True G62645
TU69529 lncRNA upstream 21780 57261798 ~ 57262000 (+) True G62641
TU69523 lncRNA upstream 28923 57254577 ~ 57254857 (+) True G62635
TU69520 lncRNA upstream 33982 57249587 ~ 57249798 (+) True G62632
TU69516 lncRNA upstream 39216 57244316 ~ 57244564 (+) True G62628
TU69620 lncRNA downstream 101937 57386020 ~ 57386235 (+) True G62732
TU69623 lncRNA downstream 107967 57392050 ~ 57392290 (+) True G62735
TU69631 lncRNA downstream 121281 57405364 ~ 57405597 (+) True G62743
TU69634 lncRNA downstream 124099 57408182 ~ 57408514 (+) True G62746
TU69655 lncRNA downstream 160224 57444307 ~ 57444643 (+) True G62767
XM_036980732.1 mRNA upstream 220929 57035608 ~ 57062851 (+) False vsir
XM_021605762.2 mRNA upstream 220929 57035617 ~ 57062851 (+) True vsir
XM_021605747.2 mRNA upstream 379554 56894252 ~ 56904226 (+) True eif3s6ip
XM_021605703.2 mRNA upstream 687127 56551748 ~ 56596653 (+) False LOC110525521
XR_005052193.1 mRNA upstream 1258867 55976159 ~ 56024913 (+) True LOC118964919
XM_036989719.1 mRNA downstream 338184 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA downstream 410415 57694498 ~ 57722025 (+) True LOC118964920
XM_021605791.2 mRNA downstream 522051 57806134 ~ 57937988 (+) False wdr11
XR_005052202.1 mRNA downstream 677633 57961716 ~ 57963823 (+) True LOC110525578
XM_036980882.1 mRNA downstream 1524287 58808370 ~ 58838199 (+) False fam160b1
TU68593 other upstream 1031765 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 1036010 56246584 ~ 56247770 (+) True G61804
TU68019 other upstream 1253409 56019476 ~ 56030371 (+) True G61284
TU67933 other upstream 1360404 55905508 ~ 55923376 (+) True G61202
TU66625 other upstream 2562317 54721188 ~ 54721463 (+) True G59963
TU70898 other downstream 882482 58166565 ~ 58168178 (+) True G63958
TU70899 other downstream 937439 58221522 ~ 58222852 (+) False G63959
TU70900 other downstream 937439 58221522 ~ 58223130 (+) True G63959
TU71238 other downstream 1302775 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 1381251 58665334 ~ 58665906 (+) True G64315

Expression Profile