RNA id: TCONS_00026637


Basic Information

Item Value
RNA id TCONS_00026637
length 678
lncRNA type lincRNA
GC content 0.38
exon number 5
gene id XLOC_013520
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33714357 ~ 33735250 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGTAATAACTCAGAAAATACATGAAGATTTGCAATAAAAATATAgatcaatgaagaaaaaaataacaagagCTTCAAGAAGATCTAGAGAAATGCACAAACAAGTGTGCTAAATTAGAAAAAGAGAAACAGGATCTTGTTGAAGAGCTGGCCACCTACAAAAGCCTCAACACAACACTGCAGTACAATATAGATGAAGTGCTACAAAGAGCCTTCTCCAAAAAAGCTCCATCTTTTCTTAGTATACCTTCTGGCTCTTTTGAGAGCACACCTGAGAGATCAGATGAGCTGCCTAATGGTTCTGAGGACAACAACAACACCTATGAACCAATGAGACTTTATGAAGTAAATGGTGACAAGATCCACATAGGAGACAACATTTGGATCCGAGAAGAggtgtggaaaaaaatctaatCGACTACAAAAGATTCTCTTTTTGTGAAAGAGATGGCTGTAGCATTGTGGGGGACTGCCACTTTAAAAACAAGAAGTATGTCAGGAAAGGAGTGTCCCACCAAAAATAGTTCAGCAAAGCCTCCCTTGACACCATCCAAGTTGCAAATTTTGagagtCTGTTTCAGTGACTGGCTGAAACAAAAGGAACCcaaaagaaaagagagagagaagagggaAAACCAGATGGGGTATTATTTATCCCAAAAAATACAGGATATcat

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000141394

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026629 lncRNA downstream 666913 33043295 ~ 33047444 (-) True XLOC_013514
TCONS_00026977 lncRNA downstream 670081 33042762 ~ 33044276 (-) False XLOC_013514
TCONS_00026976 lncRNA downstream 674500 33037834 ~ 33039857 (-) True XLOC_013513
TCONS_00027365 lncRNA downstream 814359 32896565 ~ 32899998 (-) True XLOC_013512
TCONS_00027364 lncRNA downstream 899003 32808945 ~ 32815354 (-) True XLOC_013511
TCONS_00027367 lncRNA upstream 58518 33782464 ~ 33796612 (-) True XLOC_013521
TCONS_00026978 lncRNA upstream 222396 33946342 ~ 33949859 (-) True XLOC_013522
TCONS_00027368 lncRNA upstream 398250 34122196 ~ 34142630 (-) True XLOC_013524
TCONS_00026979 lncRNA upstream 427732 34151678 ~ 34156792 (-) True XLOC_013525
TCONS_00027369 lncRNA upstream 503406 34227352 ~ 34227899 (-) True XLOC_013527
TCONS_00026636 mRNA downstream 376654 33333411 ~ 33337703 (-) True XLOC_013519
TCONS_00026634 mRNA downstream 460318 33248996 ~ 33254039 (-) False XLOC_013518
TCONS_00026635 mRNA downstream 461374 33250324 ~ 33252983 (-) True XLOC_013518
TCONS_00026633 mRNA downstream 620652 33090483 ~ 33093705 (-) True XLOC_013517
TCONS_00026631 mRNA downstream 629351 33080843 ~ 33085006 (-) True XLOC_013516
TCONS_00026638 mRNA upstream 246439 33970385 ~ 33979693 (-) False XLOC_013523
TCONS_00026639 mRNA upstream 248885 33972831 ~ 33979422 (-) False XLOC_013523
TCONS_00026640 mRNA upstream 248885 33972831 ~ 33979435 (-) True XLOC_013523
TCONS_00026641 mRNA upstream 257528 33981474 ~ 34143189 (-) False XLOC_013524
TCONS_00026642 mRNA upstream 264468 33988414 ~ 34061477 (-) False XLOC_013524
TCONS_00026632 other downstream 620616 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 1187253 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 2858822 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 3795252 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 3815996 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026656 other upstream 1849235 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 2731361 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 3685877 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 5462228 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 5862600 39586546 ~ 39586665 (-) True XLOC_013565

Expression Profile

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