RNA id: TU70480


Basic Information

Item Value
RNA id TU70480
length 213
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G63566
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57773043 ~ 57794684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccatggccttttttgcctttacctcccttctcacctcatttgctcacatcgtatatagacttgtttatactgtattattgactgtatgtttgttttactccatgtgtaactctgtgttgttgtgtgtgtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgcctacctggttaaataaaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69914 lncRNA downstream 212601 57452893 ~ 57560442 (-) True cdh23
TU70327 lncRNA downstream 252093 57520305 ~ 57520950 (-) True G63415
TU70283 lncRNA downstream 323367 57449411 ~ 57449676 (-) True G63372
TU70281 lncRNA downstream 324741 57448071 ~ 57448302 (-) True G63370
TU70271 lncRNA downstream 337469 57435373 ~ 57435574 (-) True G63360
TU70718 lncRNA upstream 93222 57887906 ~ 57941031 (-) False G63784
TU70717 lncRNA upstream 102882 57897566 ~ 57941031 (-) True G63784
TU70803 lncRNA upstream 204592 57999276 ~ 57999504 (-) True G63867
TU71699 lncRNA upstream 238826 58033510 ~ 58100951 (-) True G64725
TU71787 lncRNA upstream 368481 58163165 ~ 58163722 (-) True G64810
XM_036980724.1 mRNA downstream 212619 56904609 ~ 57560424 (-) False cdh23
XM_036980719.1 mRNA downstream 899659 56794283 ~ 56873384 (-) True smoc2
XM_021605727.2 mRNA downstream 899684 56791621 ~ 56873359 (-) False smoc2
XM_021605716.2 mRNA downstream 899685 56791621 ~ 56873358 (-) False smoc2
XM_021605723.2 mRNA downstream 899687 56791621 ~ 56873356 (-) False smoc2
XM_021605811.2 mRNA upstream 374806 58169490 ~ 58282803 (-) False LOC110525582
XM_021605820.2 mRNA upstream 374806 58169490 ~ 58282803 (-) False LOC110525582
XM_021605857.2 mRNA upstream 374806 58169490 ~ 58282803 (-) False LOC110525582
XM_021605866.2 mRNA upstream 374806 58169490 ~ 58282803 (-) False LOC110525582
XM_021605840.2 mRNA upstream 374806 58169490 ~ 58282804 (-) False LOC110525582
TU70239 other downstream 374555 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 710195 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 710195 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 1239068 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 1619125 56153430 ~ 56153918 (-) True G61715
TU72149 other upstream 990058 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 1349689 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 2635523 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 3887594 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 4187047 61981731 ~ 61982395 (-) True LOC110526417

Expression Profile