RNA id: TU71839


Basic Information

Item Value
RNA id TU71839
length 203
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G64862
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58304552 ~ 58304754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttagagcattggactagtaaccgaaaggttgcaagttcatatcccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcttaggccgccattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaaaatatatatatatttggtaaatattttcttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71720 lncRNA downstream 134805 58166834 ~ 58169747 (-) False LOC110525582
TU71721 lncRNA downstream 136401 58166565 ~ 58168151 (-) False LOC110525582
TU71722 lncRNA downstream 136401 58166834 ~ 58168151 (-) True LOC110525582
TU71790 lncRNA downstream 138855 58165491 ~ 58165697 (-) True G64813
TU71787 lncRNA downstream 140830 58163165 ~ 58163722 (-) True G64810
TU71847 lncRNA upstream 7644 58312398 ~ 58312912 (-) True G64870
TU71857 lncRNA upstream 20748 58325502 ~ 58325709 (-) True G64880
TU71861 lncRNA upstream 23432 58328186 ~ 58328386 (-) True G64884
TU71863 lncRNA upstream 24981 58329735 ~ 58329956 (-) True G64886
TU71868 lncRNA upstream 31973 58336727 ~ 58337080 (-) True G64891
XM_021605831.2 mRNA downstream 21747 58169490 ~ 58282805 (-) False LOC110525582
XM_021605847.2 mRNA downstream 21747 58169490 ~ 58282805 (-) False LOC110525582
XM_021605840.2 mRNA downstream 21748 58169490 ~ 58282804 (-) False LOC110525582
XM_021605811.2 mRNA downstream 21749 58169490 ~ 58282803 (-) False LOC110525582
XM_021605820.2 mRNA downstream 21749 58169490 ~ 58282803 (-) False LOC110525582
XM_036980792.1 mRNA upstream 48891 58353645 ~ 58535096 (-) False LOC110532479
XM_036980801.1 mRNA upstream 48891 58353645 ~ 58535096 (-) False LOC110532479
XM_036980807.1 mRNA upstream 48891 58353645 ~ 58535096 (-) False LOC110532479
XM_036980814.1 mRNA upstream 48891 58353645 ~ 58535096 (-) False LOC110532479
XM_036980817.1 mRNA upstream 48891 58353645 ~ 58535096 (-) True LOC110532479
TU70239 other downstream 906064 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 1241704 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 1241704 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 1770577 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 2150634 56153430 ~ 56153918 (-) True G61715
TU72149 other upstream 479988 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 839619 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 2125453 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 3377524 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 3676977 61981731 ~ 61982395 (-) True LOC110526417

Expression Profile