RNA id: TU71847


Basic Information

Item Value
RNA id TU71847
length 515
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G64870
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58312398 ~ 58312912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gactctgcaaggtgtcaaaagcgttccacagggatgctggcccatgtggatgccaatgcttcccacagttgtgtcaagttggctggatatccttgggtggtggaccattcttgatacacacaggaaactgttgagtgtgaaaaacccagcagcgttgcacttcttgacacactcaaaccagtgcacctggcacctactaccgtacccctttcaaaggcacttaaatcttttgtcttgcccattcaccctctgaatggcacacatgtccccatgtcttaattgtctcaaagctttaaaatccttctttaacctgtctcctccccttcatctacactgatttgaagtggatttaacatgtgacatcaataagggatcgtagctttcacctggatttacctggtcagtctatgtcatggtcTTGGCCAGGGGAAGATGGGTGTTGGGATGAGCGTTAAATAGACCAGCACTTAAATGTTTTTTCAATGGTAAACAGCCTTAGTGAActatcttcattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71839 lncRNA downstream 7644 58304552 ~ 58304754 (-) True G64862
TU71720 lncRNA downstream 142651 58166834 ~ 58169747 (-) False LOC110525582
TU71721 lncRNA downstream 144247 58166565 ~ 58168151 (-) False LOC110525582
TU71722 lncRNA downstream 144247 58166834 ~ 58168151 (-) True LOC110525582
TU71790 lncRNA downstream 146701 58165491 ~ 58165697 (-) True G64813
TU71857 lncRNA upstream 12590 58325502 ~ 58325709 (-) True G64880
TU71861 lncRNA upstream 15274 58328186 ~ 58328386 (-) True G64884
TU71863 lncRNA upstream 16823 58329735 ~ 58329956 (-) True G64886
TU71868 lncRNA upstream 23815 58336727 ~ 58337080 (-) True G64891
TU71724 lncRNA upstream 34381 58347293 ~ 58351744 (-) True G64748
XM_021605831.2 mRNA downstream 29593 58169490 ~ 58282805 (-) False LOC110525582
XM_021605847.2 mRNA downstream 29593 58169490 ~ 58282805 (-) False LOC110525582
XM_021605840.2 mRNA downstream 29594 58169490 ~ 58282804 (-) False LOC110525582
XM_021605857.2 mRNA downstream 29595 58169490 ~ 58282803 (-) False LOC110525582
XM_036980792.1 mRNA upstream 40733 58353645 ~ 58535096 (-) False LOC110532479
XM_036980801.1 mRNA upstream 40733 58353645 ~ 58535096 (-) False LOC110532479
XM_036980807.1 mRNA upstream 40733 58353645 ~ 58535096 (-) False LOC110532479
XM_036980814.1 mRNA upstream 40733 58353645 ~ 58535096 (-) False LOC110532479
XM_036980817.1 mRNA upstream 40733 58353645 ~ 58535096 (-) True LOC110532479
TU70239 other downstream 913910 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 1249550 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 1249550 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 1778423 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 2158480 56153430 ~ 56153918 (-) True G61715
TU72149 other upstream 471830 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 831461 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 2117295 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 3369366 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 3668819 61981731 ~ 61982395 (-) True LOC110526417

Expression Profile