RNA id: TU71863



Basic Information


Item Value
RNA id TU71863
length 222
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G64886
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58329735 ~ 58329956 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACATttggttgggggattgtggagcccatgtcatctgatgcagcaattcattactctccttcttggtaaaatagcccttacacagcccagaggtgtgttttgggtcattgtcctgttgaaaaaacaaTTTTAGTCctactaagcccaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggtgaagtgtgcattgaattataaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71861 lncRNA downstream 1349 58328186 ~ 58328386 (-) True G64884
TU71857 lncRNA downstream 4026 58325502 ~ 58325709 (-) True G64880
TU71847 lncRNA downstream 16823 58312398 ~ 58312912 (-) True G64870
TU71839 lncRNA downstream 24981 58304552 ~ 58304754 (-) True G64862
TU71720 lncRNA downstream 159988 58166834 ~ 58169747 (-) False LOC110525582
TU71868 lncRNA upstream 6771 58336727 ~ 58337080 (-) True G64891
TU71724 lncRNA upstream 17337 58347293 ~ 58351744 (-) True G64748
TU71916 lncRNA upstream 99194 58429150 ~ 58429450 (-) True G64938
TU71968 lncRNA upstream 255330 58585286 ~ 58586678 (-) True G64988
TU72038 lncRNA upstream 333994 58663950 ~ 58664149 (-) True G65057
XM_021605831.2 mRNA downstream 46930 58169490 ~ 58282805 (-) False LOC110525582
XM_021605847.2 mRNA downstream 46930 58169490 ~ 58282805 (-) False LOC110525582
XM_021605840.2 mRNA downstream 46931 58169490 ~ 58282804 (-) False LOC110525582
XM_021605857.2 mRNA downstream 46932 58169490 ~ 58282803 (-) False LOC110525582
XM_036980792.1 mRNA upstream 23689 58353645 ~ 58535096 (-) False LOC110532479
XM_036980801.1 mRNA upstream 23689 58353645 ~ 58535096 (-) False LOC110532479
XM_036980807.1 mRNA upstream 23689 58353645 ~ 58535096 (-) False LOC110532479
XM_036980814.1 mRNA upstream 23689 58353645 ~ 58535096 (-) False LOC110532479
XM_036980817.1 mRNA upstream 23689 58353645 ~ 58535096 (-) True LOC110532479
TU70239 other downstream 931247 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 1266887 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 1266887 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 1795760 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 2175817 56153430 ~ 56153918 (-) True G61715
TU72149 other upstream 454786 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 814417 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 2100251 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 3352322 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 3651775 61981731 ~ 61982395 (-) True LOC110526417

Expression Profile