RNA id: TU71868



Basic Information


Item Value
RNA id TU71868
length 354
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G64891
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58336727 ~ 58337080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGACACAATTTTACTGTATCCTTTTTAATGCAGCAAACATTTAATTCTCAATGACTGTTTGTAATGTATTTTTGTGTTGTTTTGCAAGGTCCTGTGGATGTTTACATTTATATAATTGCCTTCATTGTAAAAAGCAACAAGCGTACAACTGTTCACTTCTATAAATTTCCTTTGTCTACTAAAGACTTACCTCAGCCCTCACTCTCTCAATTTTCTCCCATATTCACACTTCATTTAATGTTGTAAATTCAGCTGGCTCTCATATCTATCCAATAAAGTGTACATTTTCCCCACTAATAgcctataataacttaataaacAGTTTTTCCTAAAGGCAGCTATTGTTCTACAGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71863 lncRNA downstream 6771 58329735 ~ 58329956 (-) True G64886
TU71861 lncRNA downstream 8341 58328186 ~ 58328386 (-) True G64884
TU71857 lncRNA downstream 11018 58325502 ~ 58325709 (-) True G64880
TU71847 lncRNA downstream 23815 58312398 ~ 58312912 (-) True G64870
TU71839 lncRNA downstream 31973 58304552 ~ 58304754 (-) True G64862
TU71724 lncRNA upstream 10213 58347293 ~ 58351744 (-) True G64748
TU71916 lncRNA upstream 92070 58429150 ~ 58429450 (-) True G64938
TU71968 lncRNA upstream 248206 58585286 ~ 58586678 (-) True G64988
TU72038 lncRNA upstream 326870 58663950 ~ 58664149 (-) True G65057
TU72039 lncRNA upstream 327327 58664407 ~ 58664627 (-) True G65058
XM_021605831.2 mRNA downstream 53922 58169490 ~ 58282805 (-) False LOC110525582
XM_021605847.2 mRNA downstream 53922 58169490 ~ 58282805 (-) False LOC110525582
XM_021605840.2 mRNA downstream 53923 58169490 ~ 58282804 (-) False LOC110525582
XM_021605857.2 mRNA downstream 53924 58169490 ~ 58282803 (-) False LOC110525582
XM_036980792.1 mRNA upstream 16565 58353645 ~ 58535096 (-) False LOC110532479
XM_036980801.1 mRNA upstream 16565 58353645 ~ 58535096 (-) False LOC110532479
XM_036980807.1 mRNA upstream 16565 58353645 ~ 58535096 (-) False LOC110532479
XM_036980814.1 mRNA upstream 16565 58353645 ~ 58535096 (-) False LOC110532479
XM_036980817.1 mRNA upstream 16565 58353645 ~ 58535096 (-) True LOC110532479
TU70239 other downstream 938239 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 1273879 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 1273879 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 1802752 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 2182809 56153430 ~ 56153918 (-) True G61715
TU72149 other upstream 447662 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 807293 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 2093127 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 3345198 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 3644651 61981731 ~ 61982395 (-) True LOC110526417

Expression Profile