RNA id: TU71724


Basic Information

Item Value
RNA id TU71724
length 4452
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G64748
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58347293 ~ 58351744 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaaactcagtttttcacaattcctgacatttaaacctagtaaaaTTTCcatgtcttagatcagttaggatcaccacttttattttatgaatgtaaaatgtcagaataatagtagtgattttatttcagcttttatttccttcatcacattcccagtgggtcagaagtttacatacgctcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaatgtttcgggtagtcttccacaagcttttggcccattcctcctgacagagctggtgtaactgggtaAGGTtcgtaagcctccttgctcgcgcactcttttttcagttctgccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattattcatttggaagaaccatttgcgaccaagctttaacttcctgagtgttgtcttgagatgttgcttcaatatagccacataattttccatcctcatgatgccatctattttgtgaagaccaccagtccctcctgcagcaaagcacccccacaacatgatgctgccactccgtgcttcacggttgggatggtgttcttcggcttgcaagcatcccgcctttttcctccaaacgatggtaattatggccaaacagttctatttttgtttcatcagactagaggacatttccccaaaaagtacgatgtgcagttgcaaactgtagtctggctttttttatggcagttttggagcagtgacttcttccttgctgaatggcctttcaggttatgttgatatagggctcgttttactgtggatatagatacttttgtagctgtttcctccagcatattcacaaggtcctttgctgttcttggattgattttcacttttcgcaccaaagtacgttcatctctaggagacagaacgttgtctccttcctgagcggtatgactgctgcgtactattgtttgtacagatgaacgtggtaccttcaagcgtttagaaattgctcccaaggatgaaccagacttgtggagttgtgatttatttttattttcccaatgtcaagtaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtacaattgactcaaatgatgtcaattggcctatcagaagcttctaaagccattacataattttctggaattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaatgtctgacccactggaattgtgatacagtgaaataatctgtctgtaaacaattgttggaaaaattgcttgtAGATTACAAAGTACAtggcctaaccgacttgccaaaactatagtttgttaacaagaaatgtgtggagtggttgaaaaaacgagttttaatgactccagctgtgttgttttttttaggAGTTCCCAATTGTCTTGAACATGGtatcagtctcagcggagggagggagatagcAGCAGAGGGTCCGCCTCTCACGGTCCCTCTTTCTTTGCGTTCCTCCGATGTGACTGACCATTTagaggggacacagtcttccactTGATTGTGCCTCGGGCACAAATTCAAATTCCAGAAAAAGTTAAATACTCTGCGATATTGAAATGGACAACGAGCTGCTAATAATTATAAAACGCAGGGCTATCGATACACTTGACTACTCATTCAATGCAGCTGCAGTGCGAGTGGAAGTAGAGAGAAGTGCTTTAtgttttgtaatagtgttgaattaaaacagtgttgacagtgctgaataaaacttcgacatgaactcactcataaaaacagcagctattTGCTGTATTATTTGACAGTATCTCTAATGGTAATGGTTTTAAAAGTTATAACATCTTACCTAAGCTAGTATCAATCTTTGCTGTGGTTGGGGTCGTGGAAGCTGTAGGTAGGCACAGTGAtttgagctatctgattggccagcgcagTATGCACACTCGTTTTAGCCACAGATCTCCATGTCTGCCGGGTAGGCAAAGTTTGTCTTTTCAGACAAATTCAATGATTCCAAATGGATACATTTTGCCTACCTGGTGCGCAAGGACTTCTGAAAAAAAGAGGCATCTACCGCCAACagcacaaaacaaaaaaaaaacacatgccTCTGACTTTATCGTTGGcttctacagaaatgtttggtgatcgactaacatgctgaccagaccagacacgtcgggtgcgcgagcgtcgcaaaatacattttgaaatttgtgttattcaattattgcacccacactgcttgcgcgCGCCAAAGAGtgtctgcgatgccaagggctaaaatataactttctatttctgacgcagatcgcgctgaaagtcctgcctctcccatttcctcattggttattcccacgtgggtgattgaaagagcAACTTTGTttccggttgtcgtggtaatactatgaaagtgatcaccatataagttcaaagatgaaaaagcctggaaggaggagagatgactagaaacaatttggttggccgttttatgtgtggattaattgtcggagtagaggtccttgtgcatttcaggtaaaataacaactcaatgtttatatcccatgacaaattagctagcaacagcaagctagctaaataggacaaattaacacatacaattaattatctgtaaggtccctcgagcagtcgagcagtgaatttcaaacacagtttCAAccgcaaagaccagggaggttttccaatgcctcgcaaagagcacctattggtagatgggggggggggggagagaaaccagatattgaatatccctttaaacatggtgaaattattaattacactttggatggtgtatcaatacacacaaatatacaggcctccttcctaacttagttgccggaaaggaaagaaaccactcagggatttcaccataaggcGAATGGTGACTTAAACTACTTGTTTTAAAGACCTGTGATAGAagactgaggatggatcagcaaCGTAGTTTctgcacaatactaacctaaatgaaggaagcctgtacagaataaaaatattccaaaacatgcatgtttgcgataaggcactaaagtaaaactgcaaagaatgtggcacagaaatgtactttatgtcctgagTACGAAGTGTCATGTTTGgaacaaatccaacacaacacatcactaatTACCACTTCATATttccaagcatggtggtggctgcatcatgttatgggtatgcttgtcatcggcaaggactagggattttTTGAGgggggataaaaaaataaatggaatagagctaagcacaggcaaaatcctagaggaaaacctggtttattgtgcttttcaacagacactgggagacactcacctttcagcaggacaatatcaaatcaaattgtattagtcacatgctccgaatattAAACATTAAACACAAGGTCAAACATACACTGGAGGTGCTTACCAAGACTACATTGAATATTTCTGAGtggcttagttacagttttgacttaaattgtcttgaaaacggctgtctagcaatgatcaacaaccaacttgacagagcttgaagaatttgaaaaataatatgcaaatattgtacaatccagtgtgcaaagctcttagacttacccagaaatactcacagccTTAATAGTTGCCAAGGATGATtcataacatgtattgactcgggtgtgaatacttacgtaaattagacatttctgtgtttcattttcactacatttgcaaaaatgtctaaaaacatgtttatactttgtcgttatgggttgagagatggatggatgagagggaaacatatttaatccattttgaattccagCTGTAACGCaataaaatgtgaaataaatctaaaagtatgaatgctttctgaaggcatatTGCACTCACCTGGCGGCCTCGTCTATGATATTATATCTGAATCACGTTTGGTAGATGTCAGTTTTATCCATAATACGCAAGGTTTCAGTTTAACAAAGTATGTTGTCTATTTAGTTCACAACTATCAATCCAGTTGATTAAGACTCAGAAATATTGGTTACTGGGAACATTAATGTCAGTGTAATTTTGATTTCATAATGTTTGACTTTCACCCCACGGAAAGCAGCAGTAGCCATCATCTTCACCCTAACCCAGCACAAGTCATGGTTCTCCTCTGTACTGATATGGGATCAGACTATttactgatctagaatcagtgaAGTTGAGGAGAATCTGAAAGTTGCTGCTTCACTCTGAGGATTGGGCTCATACACGCCACATCCACAAACCACACTGAAATAAACATGATCTGGTTGTATTCCTGTGACGcaaacatttgtgtgtgtgtgtgctgtatgctTGTTTGTCTGTCACTGATATTTATAGCTTTATTTGCTCCTTTATTATTGATACTATTATTTTGTTTCAAACAAATAAAGGGATGAAATATCCAAATGCT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71868 lncRNA downstream 10213 58336727 ~ 58337080 (-) True G64891
TU71863 lncRNA downstream 17337 58329735 ~ 58329956 (-) True G64886
TU71861 lncRNA downstream 18907 58328186 ~ 58328386 (-) True G64884
TU71857 lncRNA downstream 21584 58325502 ~ 58325709 (-) True G64880
TU71847 lncRNA downstream 34381 58312398 ~ 58312912 (-) True G64870
TU71916 lncRNA upstream 77406 58429150 ~ 58429450 (-) True G64938
TU71968 lncRNA upstream 233542 58585286 ~ 58586678 (-) True G64988
TU72038 lncRNA upstream 312206 58663950 ~ 58664149 (-) True G65057
TU72039 lncRNA upstream 312663 58664407 ~ 58664627 (-) True G65058
TU72041 lncRNA upstream 317790 58669534 ~ 58671224 (-) True G65060
XM_021605831.2 mRNA downstream 64488 58169490 ~ 58282805 (-) False LOC110525582
XM_021605847.2 mRNA downstream 64488 58169490 ~ 58282805 (-) False LOC110525582
XM_021605840.2 mRNA downstream 64489 58169490 ~ 58282804 (-) False LOC110525582
XM_021605857.2 mRNA downstream 64490 58169490 ~ 58282803 (-) False LOC110525582
XM_036980792.1 mRNA upstream 1901 58353645 ~ 58535096 (-) False LOC110532479
XM_036980801.1 mRNA upstream 1901 58353645 ~ 58535096 (-) False LOC110532479
XM_036980807.1 mRNA upstream 1901 58353645 ~ 58535096 (-) False LOC110532479
XM_036980814.1 mRNA upstream 1901 58353645 ~ 58535096 (-) False LOC110532479
XM_036980817.1 mRNA upstream 1901 58353645 ~ 58535096 (-) True LOC110532479
TU70239 other downstream 948805 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 1284445 57035667 ~ 57062848 (-) False G63093
TU69997 other downstream 1284445 57052098 ~ 57062848 (-) False G63093
TU68821 other downstream 1813318 56524970 ~ 56533975 (-) True G61978
TU68495 other downstream 2193375 56153430 ~ 56153918 (-) True G61715
TU72149 other upstream 432998 58784742 ~ 58785617 (-) True G65147
TU72370 other upstream 792629 59144373 ~ 59155145 (-) True LOC110525695
TU74240 other upstream 2078463 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 3330534 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 3629987 61981731 ~ 61982395 (-) True LOC110526417

Expression Profile