RNA id: TU71058


Basic Information

Item Value
RNA id TU71058
length 4356
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G64116
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58347378 ~ 58351733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACAGACAAACAagcatacagcacacacacacacaaatgtttgCGTCACAGGAATACAACCAGATCATGTTTATTTCAGTGTGGTTTGTGGATGTGGCGTGTATGAGCCCAATCCTCAGAGTGAAGCAGCAACTTTCAGATTCTCCTCAACTtcactgattctagatcagtaaATAGTCTGATCCCATATCAGTACAGAGGAGAACCATGACTTGTGCTGGGTTAGGGTGAAGATGATGGCTACTGCTGCTTTCCGTGGGGTGAAAGTCAAACATTATGAAATCAAAATTACACTGACATTAATGTTCCCAGTAACCAATATTTCTGAGTCTTAATCAACTGGATTGATAGTTGTGAACTAAATAGACAACATACTTTGTTAAACTGAAACCTTGCGTATTATGGATAAAACTGACATCTACCAAACGTGATTCAGATATAATATCATAGACGAGGCCGCCAGGTGAGTGCAatatgccttcagaaagcattcatacttttagatttatttcacattttattGCGTTACAGctggaattcaaaatggattaaatatgtttccctctcatccatccatctctcaacccataacgacaaagtataaacatgtttttagacatttttgcaaatgtagtgaaaatgaaacacagaaatgtctaatttacgtaagtattcacacccgagtcaatacatgttatgaATCATCCTTGGCAACTATTAAggctgtgagtatttctgggtaagtctaagagctttgcacactggattgtacaatatttgcatattatttttcaaattcttcaagctctgtcaagttggttgttgatcattgctagacagccgttttcaagacaatttaagtcaaaactgtaactaagccaCTCAGAAATATTCAATGTAGTCTTGGTAAGCACCTCCAGTGTATGTTTGACCTTGTGTTTAATGTTTaatattcggagcatgtgactaatacaatttgatttgatattgtcctgctgaaaggtgagtgtctcccagtgtctgttgaaaagcacaataaaccaggttttcctctaggattttgcctgtgcttagctctattccatttatttttttatcccccCTCAAaaaatccctagtccttgccgatgacaagcatacccataacatgatgcagccaccaccatgcttggaaATATGAAGTGGTAattagtgatgtgttgtgttggatttgttcCAAACATGACACTTCGTActcaggacataaagtacatttctgtgccacattctttgcagttttactttagtgccttatcgcaaacatgcatgttttggaatatttttattctgtacaggcttccttcatttaggttagtattgtgcagAAACTACGttgctgatccatcctcagtctTCTATCACAGGTCTTTAAAACAAGTAGTTTAAGTCACCATTCgccttatggtgaaatccctgagtggtttctttcctttccggcaactaagttaggaaggaggcctgtatatttgtgtgtattgatacaccatccaaagtgtaattaataatttcaccatgtttaaagggatattcaatatctggtttctctcccccccccccccatctaccaataggtgctctttgcgaggcattggaaaacctccctggtctttgcggTTGaaactgtgtttgaaattcactgctcgactgctcgagggaccttacagataattaattgtatgtgttaatttgtcctatttagctagcttgctgttgctagctaatttgtcatgggatataaacattgagttgttattttacctgaaatgcacaaggacctctactccgacaattaatccacacataaaacggccaaccaaattgtttctagtcatctctcctccttccaggctttttcatctttgaacttatatggtgatcactttcatagtattaccacgacaaccggaaACAAAGTTgctctttcaatcacccacgtgggaataaccaatgaggaaatgggagaggcaggactttcagcgcgatctgcgtcagaaatagaaagttatattttagcccttggcatcgcagacaCTCTTTGGCGcgcgcaagcagtgtgggtgcaataattgaataacacaaatttcaaaatgtattttgcgacgctcgcgcacccgacgtgtctggtctggtcagcatgttagtcgatcaccaaacatttctgtagaagCCAACGATAAAGTCAGAggcatgtgttttttttttgttttgtgctGTTGGCGGTAGATGCCTCTTTTTTTCAGAAGTCCTTGCGCACCAGGTAGGCAAAATGTATCCATTTGGAATCATTGAATTTGTCTGAAAAGACAAACTTTGCCTACCCGGCAGACATGGAGATCTGTGGCTAAAACGAGTGTGCATActgcgctggccaatcagatagctcaaaTCACTGTGCCTACCTACAGCTTCCACGACCCCAACCACAGCAAAGATTGATACTAGCTTAGGTAAGATGTTATAACTTTTAAAACCATTACCATTAGAGATACTGTCAAATAATACAGCAaatagctgctgtttttatgagtgagttcatgtcgaagttttattcagcactgtcaacactgttttaattcaacactattacaaaacaTAAAGCACTTCTCTCTACTTCCACTCGCACTGCAGCTGCATTGAATGAGTAGTCAAGTGTATCGATAGCCCTGCGTTTTATAATTATTAGCAGCTCGTTGTCCATTTCAATATCGCAGAGTATTTAACTTTTTCTGGAATTTGAATTTGTGCCCGAGGCACAATCAagtggaagactgtgtcccctctAAATGGTCAGTCACATCGGAGGAACGCAAAGAAAGAGGGACCGTGAGAGGCGGACCCTCTGCTgctatctccctccctccgctgagactgataCCATGTTCAAGACAATTGGGAACTcctaaaaaaaacaacacagctggagtcattaaaactcgttttttcaaccactccacacatttcttgttaacaaactatagttttggcaagtcggttaggccaTGTACTTTGTAATCTacaagcaatttttccaacaattgtttacagacagattatttcactgtatcacaattccagtgggtcagacatttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaattatgtaatggctttagaagcttctgataggccaattgacatcatttgagtcaattgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttacttgacattgggaaaataaaaataaatcacaactccacaagtctggttcatccttgggagcaatttctaaacgcttgaaggtaccacgttcatctgtacaaacaatagtacgcagcagtcataccgctcaggaaggagacaacgttctgtctcctagagatgaacgtactttggtgcgaaaagtgaaaatcaatccaagaacagcaaaggaccttgtgaatatgctggaggaaacagctacaaaagtatctatatccacagtaaaacgagccctatatcaacataacctgaaaggccattcagcaaggaagaagtcactgctccaaaactgccataaaaaaagccagactacagtttgcaactgcacatcgtactttttggggaaatgtcctctagtctgatgaaacaaaaatagaactgtttggccataattaccatcgtttggaggaaaaaggcgggatgcttgcaagccgaagaacaccatcccaaccgtgaagcacggagtggcagcatcatgttgtgggggtgctttgctgcaggagggactggtggtcttcacaaaatagatggcatcatgaggatggaaaattatgtggctatattgaagcaacatctcaagacaacactcaggaagttaaagcttggtcgcaaatggttcttccaaatgaataatgaccccaagcatacttccaaagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggcagaactgaaaaaagagtgcgcgagcaaggaggcttacgaACCTtacccagttacaccagctctgtcaggaggaatgggccaaaagcttgtggaagactacccgaaacatttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagcgtatgtaaacttctgacccactgggaatgtgatgaaggaaataaaagctgaaataaaatcactactattattctgacattttacattcataaaataaaagtggtgatcctaactgatctaagacatgGAAAttttactaggtttaaatgtcaggaattgtgaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71057 lncRNA upstream 1227 58345845 ~ 58346151 (+) True G64115
TU71054 lncRNA upstream 3874 58343150 ~ 58343504 (+) True G64112
TU71053 lncRNA upstream 5828 58341238 ~ 58341550 (+) True G64111
TU71050 lncRNA upstream 9130 58338010 ~ 58338248 (+) True G64108
TU71045 lncRNA upstream 15335 58331839 ~ 58332043 (+) True G64103
TU71203 lncRNA downstream 182796 58534529 ~ 58539060 (+) True G64257
TU71208 lncRNA downstream 190146 58541879 ~ 58542134 (+) True G64262
TU71210 lncRNA downstream 190865 58542598 ~ 58542859 (+) True G64264
TU71196 lncRNA downstream 201945 58553678 ~ 58553903 (+) True G64250
TU71215 lncRNA downstream 202479 58554212 ~ 58554570 (+) True G64269
XR_005052202.1 mRNA upstream 383555 57961716 ~ 57963823 (+) True LOC110525578
XM_021605791.2 mRNA upstream 409390 57806134 ~ 57937988 (+) False wdr11
XM_036989719.1 mRNA upstream 581980 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA upstream 625353 57694498 ~ 57722025 (+) True LOC118964920
XM_021605762.2 mRNA upstream 1284527 57035617 ~ 57062851 (+) True vsir
XM_036980882.1 mRNA downstream 456637 58808370 ~ 58838199 (+) False fam160b1
XM_036980886.1 mRNA downstream 456951 58808684 ~ 58838199 (+) True fam160b1
trnaa-ugc mRNA downstream 710074 59061807 ~ 59061880 (+) True trnaa-ugc
XR_002473818.2 mRNA downstream 858273 59210006 ~ 59212175 (+) True LOC110525756
XM_021606181.2 mRNA downstream 932591 59284324 ~ 59299682 (+) False erlin1
TU70900 other upstream 124248 58221522 ~ 58223130 (+) True G63959
TU70899 other upstream 124526 58221522 ~ 58222852 (+) False G63959
TU70898 other upstream 179200 58166565 ~ 58168178 (+) True G63958
TU68593 other upstream 2095363 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 2099608 56246584 ~ 56247770 (+) True G61804
TU71238 other downstream 235125 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 313601 58665334 ~ 58665906 (+) True G64315
TU71284 other downstream 347563 58699296 ~ 58700379 (+) True G64338
TU72488 other downstream 972903 59324636 ~ 59325129 (+) True G65442
TU73321 other downstream 1589753 59941486 ~ 59942064 (+) True G66188

Expression Profile