RNA id: TU71220


Basic Information

Item Value
RNA id TU71220
length 238
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G64274
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58560233 ~ 58560470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATATTTCTTGCAATATCCTTTTCTCGTatgggcggttatttagaatgcataagattcgaTATTTACAATGGCATAGCTTCATAAGGTCCGATAGAGACCCAAtccttttgttcctcagtcttcctgcgctttcattcaaacccaaccccctttctttgtgtaatcAGCTGTCATATAGGTTTCGTCCACTAGGGACGTTTTTTTTGTTGACATAATTAGTCATCaatgtatgattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71219 lncRNA upstream 963 58559071 ~ 58559270 (+) True G64273
TU71215 lncRNA upstream 5663 58554212 ~ 58554570 (+) True G64269
TU71196 lncRNA upstream 6330 58553678 ~ 58553903 (+) True G64250
TU71210 lncRNA upstream 17374 58542598 ~ 58542859 (+) True G64264
TU71208 lncRNA upstream 18099 58541879 ~ 58542134 (+) True G64262
TU71194 lncRNA downstream 24820 58585290 ~ 58586694 (+) True G64248
TU71239 lncRNA downstream 27363 58587833 ~ 58588113 (+) True G64293
TU71188 lncRNA downstream 30643 58591113 ~ 58661566 (+) True G64242
TU71185 lncRNA downstream 36238 58596708 ~ 58598513 (+) False G64241
TU71187 lncRNA downstream 36238 58596708 ~ 58597225 (+) True G64241
XR_005052202.1 mRNA upstream 596410 57961716 ~ 57963823 (+) True LOC110525578
XM_021605791.2 mRNA upstream 622245 57806134 ~ 57937988 (+) False wdr11
XM_036989719.1 mRNA upstream 794835 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA upstream 838208 57694498 ~ 57722025 (+) True LOC118964920
XM_021605762.2 mRNA upstream 1497382 57035617 ~ 57062851 (+) True vsir
XM_036980882.1 mRNA downstream 247900 58808370 ~ 58838199 (+) False fam160b1
XM_036980886.1 mRNA downstream 248214 58808684 ~ 58838199 (+) True fam160b1
trnaa-ugc mRNA downstream 501337 59061807 ~ 59061880 (+) True trnaa-ugc
XR_002473818.2 mRNA downstream 649536 59210006 ~ 59212175 (+) True LOC110525756
XM_021606181.2 mRNA downstream 723854 59284324 ~ 59299682 (+) False erlin1
TU70900 other upstream 337103 58221522 ~ 58223130 (+) True G63959
TU70899 other upstream 337381 58221522 ~ 58222852 (+) False G63959
TU70898 other upstream 392055 58166565 ~ 58168178 (+) True G63958
TU68593 other upstream 2308218 56249888 ~ 56252015 (+) True G61806
TU68590 other upstream 2312463 56246584 ~ 56247770 (+) True G61804
TU71238 other downstream 26388 58586858 ~ 58587585 (+) True G64292
TU71261 other downstream 104864 58665334 ~ 58665906 (+) True G64315
TU71284 other downstream 138826 58699296 ~ 58700379 (+) True G64338
TU72488 other downstream 764166 59324636 ~ 59325129 (+) True G65442
TU73321 other downstream 1381016 59941486 ~ 59942064 (+) True G66188

Expression Profile