RNA id: TCONS_00026640


Basic Information

Item Value
RNA id TCONS_00026640
length 1642
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_013523
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33970385 ~ 33979693 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGAACTGTGCAAATGTCTATACATGTCCTGTCATGGCTCACACTTTCTGTGCCGGTGCTTCTGTTGTGGCCAGTATGTGGATCTGGAACTGAGGTGACTCCGCTGGAAACATGTGTGTACTTGATCACGCCACAGTACTCAGATGAACTTGGTACCTATCAAGACGGTGACGTGATTATTGGTGGTCTCATCAATTTACACAACCTGGCTGCAACTCCAGACCTGAGCTTCACCAGAAAACCTGGATTAGCACAATGCTTAGACCTGACAGCAGCCATGTCAATGATCAGTGGAGGAAACAAAACTTGCGGTCCCACTAAACCAGCCAAGCTTCTGATCGGAGATTCTTCATCTACTCAAAGCATTCTTCTATCCACAACCTTGGTTCCCCTGAAGATTCCAATGCTTTTACAGCATGTTAAAGACGTTCAATACACCACTCAGTTAGGAGAGGAGTTCTATTTCCTGGAAGGTGGCATTCCACCAGTCTATGACTTGGTGAACTGGCAGATAGCTCCTGATGGTTCACTCCAATATGCTTTTATTGGACATGTGGATGGGAACCAGCTCAGTATTAATGACTCAGCTATCACATGGCCTGGAGATTCTGGCAAGGTTCCAATATCTGTGTGCACGTCTGAGTGTCCTCCAGGCACACGTAAAGCCATTAAGAAGGGTCTTCCAGTGTGCTGTTTTGACTGCCTGCCCTGCACAGAGGGGGAAATCAGCAACAGTACAGGCTCAATAAAATGTTATCGCTGTCCTAAAGAGTTCTGGTCAAATAGTTACAAAAATGAATGTGTGGCCCGTGAAACTGAGTTTCTCTCTGTTAAAGAAACGATGGGCATCACGCTGATGAGTGTCGCTGTTTCCGGTGCTGTCATGACAACTACAGTAGCTGTGATTTTCCTCTACCACCGGAACACTCCAATAGTAAAAGCCAACAACTCAGAGCTGAGCTTTCTGCTCCTGCTGTCTCTCAAACTATGCTTCCTCTGCGCACTGGTGTTTGTGGGCCAGCCTTCACTCTGGTCATGTAGGATTCAGCAGGCTGCATTTGGGATTAGTTTTGTCCTGTGTATCTCCTGTATTCTGGTCAAGACATTTGTTGTTCTAATTGCATTCCATTCTACTAGACCTGAATCTTCAGCTCTTATCAAATGGTTTGGACTGGGCAAGCAGAGAGGAATTGTGCTGGTGTTTACCTGCGTCCAGGTGGTTATCTGTGCCATTTGGCTCTGTGTCAGTCCACCTTTACCTTACCAAAACTTTGGAATGCACAGATCAAAGGTCATCCTTGAGTGCACAATTGGGTCTGTTGTGGGATTCACTTGTGTACTGGGTTACATTGGCTTTTTGGCGACTGTCTGCTTCCTACTGGCCTTCTTTGCCCGCAAACTTCCAGATAATTTTAATGAGGCAAAATATATTACTTTCAGCATGCTGATCTTCTGTGCTGTCTGGGTTGCATTTGTGCCAGCATATGTTAGCTCGCCAGGAAAGTACAGTGTAGTGGTGGAAGTTTTTGCCATCCTGGCCTCTAGTTTTggacttttgttttgtatttttgtcccaaaatgttacattattttaCTTAAGCCAGAAAACAACACTAAAAAGTTTCTTATGggaaaagaataa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-302 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000167698

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026978 lncRNA downstream 22972 33946342 ~ 33949859 (-) True XLOC_013522
TCONS_00027367 lncRNA downstream 176219 33782464 ~ 33796612 (-) True XLOC_013521
TCONS_00027366 lncRNA downstream 237581 33714357 ~ 33735250 (-) True XLOC_013520
TCONS_00026637 lncRNA downstream 248885 33714357 ~ 33723946 (-) False XLOC_013520
TCONS_00026629 lncRNA downstream 925387 33043295 ~ 33047444 (-) True XLOC_013514
TCONS_00027368 lncRNA upstream 142761 34122196 ~ 34142630 (-) True XLOC_013524
TCONS_00026979 lncRNA upstream 172243 34151678 ~ 34156792 (-) True XLOC_013525
TCONS_00027369 lncRNA upstream 247917 34227352 ~ 34227899 (-) True XLOC_013527
TCONS_00027370 lncRNA upstream 572093 34551528 ~ 34553656 (-) False XLOC_013529
TCONS_00027371 lncRNA upstream 572093 34551528 ~ 34554531 (-) False XLOC_013529
TCONS_00026636 mRNA downstream 635128 33333411 ~ 33337703 (-) True XLOC_013519
TCONS_00026634 mRNA downstream 718792 33248996 ~ 33254039 (-) False XLOC_013518
TCONS_00026635 mRNA downstream 719848 33250324 ~ 33252983 (-) True XLOC_013518
TCONS_00026633 mRNA downstream 879126 33090483 ~ 33093705 (-) True XLOC_013517
TCONS_00026631 mRNA downstream 887825 33080843 ~ 33085006 (-) True XLOC_013516
TCONS_00026641 mRNA upstream 2039 33981474 ~ 34143189 (-) False XLOC_013524
TCONS_00026642 mRNA upstream 8979 33988414 ~ 34061477 (-) False XLOC_013524
TCONS_00026643 mRNA upstream 166572 34146007 ~ 34156765 (-) False XLOC_013525
TCONS_00026644 mRNA upstream 178743 34158178 ~ 34170918 (-) False XLOC_013526
TCONS_00026645 mRNA upstream 178793 34158228 ~ 34171280 (-) True XLOC_013526
TCONS_00026632 other downstream 879090 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 1445727 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 3117296 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 4053726 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 4074470 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026656 other upstream 1593746 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 2475872 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 3430388 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 5206739 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 5607111 39586546 ~ 39586665 (-) True XLOC_013565

Expression Profile

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