RNA id: TCONS_00026642


Basic Information

Item Value
RNA id TCONS_00026642
length 3035
RNA type mRNA
GC content 0.47
exon number 21
gene id XLOC_013524
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 33981474 ~ 34143189 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGAGCGATGCATGAGTGTGATGCAGTCGGGGACTCAGATGGTGAAGCTGAAGACGGGTTCTAAAGGTCTGGTCCGACTCTTCTATTTGGATGAACACCGTTCCTGTATACGCTGGAGACCATCACGCAAGAGTGAGAAAGCCAAGATCACCATCGACTCACTCTACAAGGTCACAGAAGGGCGTCAATCTGACATCTTCCATCGCCATGCGGAAGGAAGCTTTGATCCCAGCTGCTGTTTTACTATTTACCATGGCAACCACATGGAGTCTCTGGACTTGGTTACCTCAAACTCGGAGGAAGCGCGGACATGGTGGATGAAGCAGACCTTTGAGGAGGCTGATAAGAATGGAGATGGTCTTTTGAACATGGAGGAGATCTACCAGCTTTTACACAAGATGAATGTCAACTTGCCTCGAAGGAAAGTTAAACAGATGTTCCAGGAAGCAGATACTGATGACCAGCAGGGCACACTGACGTTTGAGGAGTTCACGGTCTTCTATAAGATGATGTCATTAAGACGAGACCTTTTTCTATTGCTCATGTGCTTCAGCGACAAGAAGGATCATCTGACTGCAGAAGAACTCGGGAACTTTCTGCGTGTGGAGCAAAAGATGTCCAGTGTGACCCCTGAGTGCTGCCTGGACATAATCAATAAGTTTGAAGTCTCTGAGGAGAACAAGCAGAATGGAGTTCTTGGAATCGAAGGCTTCACCAACTACATGCGGAGCCCAGCCTGTGATGTATTTAACCCTCAACACCACGAGATCAATCAGGACATGGATCAGCCTATTTGTAACTATTTCATAGCTTCCTCTCATAACACTTACCTGACTGGAGACCAGCTGTTGTCTCACTCCAAGACAGACATGTATGCATGGGTCCTGCAGGCTGGCTGTCGCTGTGTGGAGGTGGATTGTTGGGACGGTCCGGATGGGGAGCCTATGGTCCAACACGGTTACACTCTGACTTCGAAGATCACCTTTAAATCTGTCATTGAGACCATCAACAAATACGCCTTTGTAAACAACGAGTTCCCTGTGATCCTGTCCATAGAGAATCACTGCAGCATTCAGCAGCAGAAGAAGATCGCTCAGCACCTCAAGGAGATCTTCGGAGACAAGCTTGATGTGGGGGAGGCCCTGAACAAAGACCCCAAGCAGCTCCCTAGCCCCAATTTGCTGAAGGGCAAGATACTCTTGAAGgggaAGCGCCTTCCTTCGTACCTGTCGGCAGATGCTGAAGAGGGTGAGGTGTCTGATGATGACAGTGCTGATGAGATTGAAGATGATTTTAAGCTAAAAAATAGCACGTCTAATGGGCCTAGTCAGCACCAAGTGGAGTCCCACATCAGGAAGAAACTAGACTCATTGATGAAAGAGTCTCAGATTGGGGACAAAGAGGACACAGACAGTTTCTCTATCCGTGCGCTGCTTCGTGCCACTCACGAGGGCCTCCAAAGAAACCTACGCAAGAATTCCAAAGACGGCATGAAGAAATCCCAGAGCCGTTCCTTTATCAGCAACCTCAAGCACAAGAGGCACTCTAAATCAAGGCTTAAATGTCAAAGTGTTGAAACAGAAGATGACAGCCAGCAAGAGCCATCAGGTGGACAGTTCAACAGAGGTGGACGGAGAAGGAAAACAATAAAGCTAAGCAGAGATCTTTCAGATCTGGTGGTCTTTACCAATTCTGTTGCCTCTCAGGAGTGTTTAGATGAGGGATCACCCTGTAATGTTTTGTCATTTAGTGAGGCACGAGCTCAGAACTTGGTGCACCATCGAGCAGAGCGCTTCTTGACATTCAACCAACGACAGCTTTCTCGAATCTATCCCTCTGCCTACCGAATCGACTCCAGCAACTTTAACCCACAAACATACTGGAATGTGGGTTGCCAACTTGTGGCTTTAAACTACCAGACAGAGGGTCGTATGATGCAGTTAAACAGAGCCAAATTCATGGTGAATGGAGGTAGTGGTTATGTGCTCAAACCCAGCCTGATGTCAAAAGGCGCCTTCAACCCTCTAAGTGATGAACCACTTCCTGCAAATCCTAAGAAACAGCTCGTGATAAAAATCATTAGTGGACAGCAGCTGCCCAAACCTCCAGATTCAATGCTAGGGGACCGTGGTGAGATCATCGATCCATTTGTTGAGGTGGAGATTATTGGTCTGCCTGTGGATTGCTGTAAagagcaaaccagagttgtgGATGATAATGGATTTAACCCTGTGTGGGAAGAGACTCTGTCCTTCACACTTCACATGCCTGAGGTGGCTCTGGTTCGCTTTCTGGTCTGGGATCATGACCCCATTGGACGAGACTTTGTGGGCCAGAGAACCATAGCTTTCAGCAGTCTAATGCCAGGATATAGACACGTTTATTTGGAGGGAATGACAGAAGCATCCATTTTTGTCCATATCACAGTGCATGACATCTATGGGAAGTGGAGTCCTTTAGTCCTCAATCCAAGCTATACCATAATGCACTTGCTAGGAGCTAATAAGGGACGCCAGCTTCGGGGTTTTAGAGGGTTATTTAATAGAAGTTCCAAGTCCTCTGTAGACACACATAATGGAGTTCCACCTCGTAAACGATCCATAACTGATCACCTTCTTCGGAGGACTGCCAGTGCCCCTGCAAAAGGCCGCAAAAAGAACAAGATGCCATTGGCTGAAGCTACATATGACAGAAAGCAGAGCACTGAAGATTCTCAGAGCACTTTTGTAGAGAAGAGGATGGGGAACAGAAAAGCACTACAGCATCGCCCAGCATCCATGCCCCTGGATAAACTCCTGCACAGTAACCTCAACCTGTCCACTcctgagcaggaggagtctgatCCTGGAGCAGACACGATCATTGgtcagtttcttttttaaattaaattactttacaTTCTAGAAGGGCTATGTCATATTGAAGCAGAATGAAGGCTGTTACATCAGACACATtaagttattgttatttttgttattacttACCATTGTAGCTctaatgcacaggtgtcaaactcagttctaaaagagccgca

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0050429 calcium-dependent phospholipase C activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-398 Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process. Is expressed in brain and liver. Orthologous to human PLCH1 (phospholipase C eta 1).

Ensembl:

ensembl_id ENSDART00000135965

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026978 lncRNA downstream 38555 33946342 ~ 33949859 (-) True XLOC_013522
TCONS_00027367 lncRNA downstream 191802 33782464 ~ 33796612 (-) True XLOC_013521
TCONS_00027366 lncRNA downstream 253164 33714357 ~ 33735250 (-) True XLOC_013520
TCONS_00026637 lncRNA downstream 264468 33714357 ~ 33723946 (-) False XLOC_013520
TCONS_00026629 lncRNA downstream 940970 33043295 ~ 33047444 (-) True XLOC_013514
TCONS_00027368 lncRNA upstream 60719 34122196 ~ 34142630 (-) True XLOC_013524
TCONS_00026979 lncRNA upstream 90201 34151678 ~ 34156792 (-) True XLOC_013525
TCONS_00027369 lncRNA upstream 165875 34227352 ~ 34227899 (-) True XLOC_013527
TCONS_00027370 lncRNA upstream 490051 34551528 ~ 34553656 (-) False XLOC_013529
TCONS_00027371 lncRNA upstream 490051 34551528 ~ 34554531 (-) False XLOC_013529
TCONS_00026638 mRNA downstream 8721 33970385 ~ 33979693 (-) False XLOC_013523
TCONS_00026640 mRNA downstream 8979 33972831 ~ 33979435 (-) True XLOC_013523
TCONS_00026639 mRNA downstream 8992 33972831 ~ 33979422 (-) False XLOC_013523
TCONS_00026636 mRNA downstream 650711 33333411 ~ 33337703 (-) True XLOC_013519
TCONS_00026634 mRNA downstream 734375 33248996 ~ 33254039 (-) False XLOC_013518
TCONS_00026643 mRNA upstream 84530 34146007 ~ 34156765 (-) False XLOC_013525
TCONS_00026644 mRNA upstream 96701 34158178 ~ 34170918 (-) False XLOC_013526
TCONS_00026645 mRNA upstream 96751 34158228 ~ 34171280 (-) True XLOC_013526
TCONS_00026646 mRNA upstream 481048 34542525 ~ 34549721 (-) False XLOC_013528
TCONS_00026647 mRNA upstream 481049 34542526 ~ 34549758 (-) True XLOC_013528
TCONS_00026632 other downstream 894673 33090443 ~ 33093741 (-) False XLOC_013517
TCONS_00026625 other downstream 1461310 32525411 ~ 32527104 (-) True XLOC_013509
TCONS_00026611 other downstream 3132879 30854496 ~ 30855535 (-) True XLOC_013494
TCONS_00026599 other downstream 4069309 29918062 ~ 29919105 (-) True XLOC_013487
TCONS_00026598 other downstream 4090053 29895611 ~ 29898361 (-) True XLOC_013486
TCONS_00026656 other upstream 1511704 35573181 ~ 35573295 (-) True XLOC_013536
TCONS_00026662 other upstream 2393830 36455307 ~ 36465466 (-) True XLOC_013541
TCONS_00026673 other upstream 3348346 37409823 ~ 37415353 (-) False XLOC_013550
TCONS_00026691 other upstream 5124697 39186174 ~ 39188401 (-) True XLOC_013560
TCONS_00026695 other upstream 5525069 39586546 ~ 39586665 (-) True XLOC_013565

Expression Profile

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