RNA id: TU72833


Basic Information

Item Value
RNA id TU72833
length 223
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G65743
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59320049 ~ 59320271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aataaatgtcgttccacttcatgattgtgtcccacttgttgtcgattcttcacaaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaaggtcgcaaagttcaagggggccgaatgctttcgcaaggcactgtacatacatgtaatagtgccaaacatgcacacaaacatatacagttggcattgctgttataatgttagttgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72826 lncRNA downstream 7683 59310562 ~ 59312366 (-) True spef1
TU72477 lncRNA downstream 14872 59304846 ~ 59305177 (-) True G65433
TU72464 lncRNA downstream 37452 59282324 ~ 59282597 (-) True G65420
TU72463 lncRNA downstream 37860 59281990 ~ 59282189 (-) True G65419
TU72412 lncRNA downstream 51665 59179972 ~ 59268384 (-) True G65373
TU72834 lncRNA upstream 4365 59324636 ~ 59325294 (-) True G65744
TU72835 lncRNA upstream 5579 59325850 ~ 59326050 (-) True G65745
TU72836 lncRNA upstream 6877 59327148 ~ 59327476 (-) True G65746
TU72837 lncRNA upstream 7724 59327995 ~ 59328273 (-) True G65747
TU72841 lncRNA upstream 14509 59334780 ~ 59335027 (-) True G65751
XM_021606204.2 mRNA downstream 1925 59310306 ~ 59318124 (-) False spef1
XM_036980984.1 mRNA downstream 1925 59310306 ~ 59318124 (-) False spef1
XM_036980995.1 mRNA downstream 1925 59310306 ~ 59318124 (-) False spef1
XM_036981003.1 mRNA downstream 1925 59310306 ~ 59318124 (-) False spef1
XM_036981000.1 mRNA downstream 5459 59310306 ~ 59314590 (-) False spef1
XM_021606236.2 mRNA upstream 22051 59342322 ~ 59348237 (-) False fuom
XM_021606228.2 mRNA upstream 22059 59342330 ~ 59348236 (-) True fuom
XM_021606248.2 mRNA upstream 29285 59349556 ~ 59368121 (-) True echs1
XM_036981062.1 mRNA upstream 59541 59379812 ~ 59396461 (-) False mtg1
XM_021606260.2 mRNA upstream 59541 59379812 ~ 59398680 (-) True mtg1
TU72370 other downstream 164904 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 534432 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 1921561 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2257201 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 1109936 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2362007 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2661460 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 3091251 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3956937 63277208 ~ 63277752 (-) True G70013

Expression Profile