RNA id: TU72837


Basic Information

Item Value
RNA id TU72837
length 279
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G65747
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59327995 ~ 59328273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttggtattcatatcacaaaatatataaataagctctccacaatgaatttcaatagaacaCTTGTGAAAATAGACAAgctcctgcaaccatggagaggtaaatacctgtctatttatggaaaaattgctctgattaactccttagtcatatctcagtttactcacttacttatggcgctgcctactcctgatgattcatttttcaaattatatgagcaaaaaatatttagctttatctgggacgctaaaccagacaaaataaaacgtGCCTATCTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72836 lncRNA downstream 519 59327148 ~ 59327476 (-) True G65746
TU72835 lncRNA downstream 1945 59325850 ~ 59326050 (-) True G65745
TU72834 lncRNA downstream 2701 59324636 ~ 59325294 (-) True G65744
TU72833 lncRNA downstream 7724 59320049 ~ 59320271 (-) True G65743
TU72826 lncRNA downstream 15629 59310562 ~ 59312366 (-) True spef1
TU72841 lncRNA upstream 6507 59334780 ~ 59335027 (-) True G65751
TU72907 lncRNA upstream 125760 59454033 ~ 59458719 (-) True G65815
TU72911 lncRNA upstream 131780 59460053 ~ 59465429 (-) True G65817
TU72945 lncRNA upstream 187274 59515547 ~ 59515901 (-) True G65851
TU72951 lncRNA upstream 197593 59525866 ~ 59526216 (-) True G65857
XM_021606204.2 mRNA downstream 9871 59310306 ~ 59318124 (-) False spef1
XM_036980984.1 mRNA downstream 9871 59310306 ~ 59318124 (-) False spef1
XM_036980995.1 mRNA downstream 9871 59310306 ~ 59318124 (-) False spef1
XM_036981003.1 mRNA downstream 9871 59310306 ~ 59318124 (-) False spef1
XM_036981000.1 mRNA downstream 13405 59310306 ~ 59314590 (-) False spef1
XM_021606236.2 mRNA upstream 14049 59342322 ~ 59348237 (-) False fuom
XM_021606228.2 mRNA upstream 14057 59342330 ~ 59348236 (-) True fuom
XM_021606248.2 mRNA upstream 21283 59349556 ~ 59368121 (-) True echs1
XM_036981062.1 mRNA upstream 51539 59379812 ~ 59396461 (-) False mtg1
XM_021606260.2 mRNA upstream 51539 59379812 ~ 59398680 (-) True mtg1
TU72370 other downstream 172850 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 542378 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 1929507 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2265147 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 1101934 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 2354005 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2653458 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 3083249 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3948935 63277208 ~ 63277752 (-) True G70013

Expression Profile