RNA id: TU73084



Basic Information


Item Value
RNA id TU73084
length 406
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G65982
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59729847 ~ 59736154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCGCTTCTTTGGTCTTTTTCCCTTCCTTGCCCACAGcagtcttcttcttctgctttaGGGGTGCAGGTCTCTTCCTGTCCACCGCCATCTTAGCTTGGTCCGCCAGGTACTGAACAATAAAACAATCAATCAACctatcaaccaatcaaccaatcaatgaaAAAAATGATCCACCTACAGCGTCGAAGCCAGAGTTTTCAGACAGCATGAACTTGCGTggttccttcttctcctccttctgagGGACCCTCGTTCCAAACGGTGTCATGTGACCCGTCCGGATTAGCTCCTCCCACTCCGTCTCCTGAGCCGGCATCAGCATACTGCCCAGAGTAGATGGGCCGGGCTCTTCGTCCACATCGTCCTCCAGCAGTAGCTCAGCCTCTATCTTCAGTGTGTCTTCTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU73037 lncRNA downstream 44101 59663612 ~ 59685746 (-) True G65937
TU72971 lncRNA downstream 86812 59549868 ~ 59643035 (-) False LOC110532486
TU72970 lncRNA downstream 98455 59549868 ~ 59631392 (-) False LOC110532486
TU72972 lncRNA downstream 98455 59549868 ~ 59631392 (-) True LOC110532486
TU72956 lncRNA downstream 196757 59532878 ~ 59533090 (-) True G65862
TU73213 lncRNA upstream 125056 59861210 ~ 59861428 (-) True G66080
TU73233 lncRNA upstream 138415 59874569 ~ 59875057 (-) True G66100
TU73241 lncRNA upstream 145298 59881452 ~ 59882036 (-) True G66108
TU73253 lncRNA upstream 154254 59890408 ~ 59891088 (-) True G66120
TU73279 lncRNA upstream 171570 59907724 ~ 59908009 (-) True G66146
LOC110532486 mRNA downstream 85562 59641779 ~ 59644285 (-) False LOC110532486
XM_021606304.2 mRNA downstream 213115 59511553 ~ 59516732 (-) False tmem72
XM_021606321.2 mRNA downstream 213115 59511553 ~ 59516732 (-) True tmem72
XM_021606312.2 mRNA downstream 213197 59511553 ~ 59516650 (-) False tmem72
XM_021606291.2 mRNA downstream 222779 59438585 ~ 59507068 (-) True rassf4a
XR_005052269.1 mRNA upstream 280842 60016996 ~ 60024584 (-) False LOC118964951
XM_036981267.1 mRNA upstream 291064 60027218 ~ 60064905 (-) False LOC110525944
XM_036981284.1 mRNA upstream 291064 60027218 ~ 60064906 (-) False LOC110525944
XM_036981276.1 mRNA upstream 292953 60029107 ~ 60064905 (-) True LOC110525944
XM_021606503.2 mRNA upstream 353836 60089990 ~ 60124142 (-) False LOC110525964
TU72370 other downstream 574702 59144373 ~ 59155145 (-) True LOC110525695
TU72149 other downstream 944230 58784742 ~ 58785617 (-) True G65147
TU70239 other downstream 2331359 57397194 ~ 57398488 (-) True G63328
TU70000 other downstream 2666999 57035667 ~ 57062848 (-) False G63093
TU74240 other upstream 694053 60430207 ~ 60461234 (-) True LOC110526097
TU76069 other upstream 1946124 61682278 ~ 61686308 (-) True G68736
TU76326 other upstream 2245577 61981731 ~ 61982395 (-) True LOC110526417
TU76624 other upstream 2675368 62411522 ~ 62418296 (-) True G69210
TU77510 other upstream 3541054 63277208 ~ 63277752 (-) True G70013

Expression Profile